JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC18B_chr16_74403631_74426478	0/0	c0008	1341	2	2	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0009	1341	2	0	0	2	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0010	1341	2	0	0	2	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0011	1341	2	2	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0012	1341	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0013	1341	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0014	1341	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0015	1341	1	0	0	0	0	1	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0016	1341	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0017	1341	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0018	1341	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0019	1341	1	0	1	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0020	1341	1	0	1	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0021	1341	1	1	0	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0022	1341	1	0	0	0	0	1	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0023	885	1	0	0	1	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18C_chr16_70168787_70191895	0/0	c0001	1341	157	40	34	66	1	16	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0002	1341	61	2	18	34	2	5	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	1/0	c0003	1341	47	1	16	10	4	15	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0004	1341	21	21	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0005	1341	17	1	3	5	3	5	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0006	1341	10	0	0	10	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0007	1341	9	0	0	9	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0008	1341	5	5	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0009	1341	4	4	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0010	1338	3	3	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0011	1341	2	0	1	0	1	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0012	1341	2	0	2	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0013	1341	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0014	1341	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0015	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0016	1341	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0017	1341	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0018	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0019	1341	1	0	0	1	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0020	1341	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0021	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0022	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0023	1341	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0024	1341	1	0	0	0	0	1	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0025	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0026	1341	1	0	0	0	1	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0027	1341	1	0	1	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0028	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC18C_chr16_70168787_70191895	0/0	c0029	1341	1	1	0	0	0	0	copy fasta	CLEC18C	chr16	70168787	70191895
CLEC19A_chr16_19280731_19315947	1/0	c0001	561	147	30	37	50	8	21	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	c0002	561	137	59	8	61	1	8	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/1	c0003	561	76	3	10	51	2	9	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	c0004	561	54	0	11	36	1	6	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	c0005	561	8	2	6	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947