JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC19A_chr16_19280731_19315947	0/0	c0006	561	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	c0007	561	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	c0008	561	1	1	0	0	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC19A_chr16_19280731_19315947	0/0	c0009	561	1	0	0	1	0	0	copy fasta	CLEC19A	chr16	19280731	19315947
CLEC1A_chr12_10064554_10103985	0/1	c0001	843	235	83	46	77	11	17	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	1/0	c0002	843	139	8	22	95	2	11	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0003	843	3	3	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0004	843	2	2	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0005	843	1	0	0	0	1	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0006	843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0007	843	1	1	0	0	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0008	843	1	0	0	1	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1A_chr12_10064554_10103985	0/0	c0009	843	1	0	0	1	0	0	copy fasta	CLEC1A	chr12	10064554	10103985
CLEC1B_chr12_9988075_10004121	0/0	c0001	690	282	46	42	151	10	33	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	c0002	690	113	44	25	28	7	9	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/1	c0003	690	57	3	7	41	1	4	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	c0004	690	6	0	0	6	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	1/0	c0005	690	3	2	0	0	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC1B_chr12_9988075_10004121	0/0	c0006	690	1	1	0	0	0	0	copy fasta	CLEC1B	chr12	9988075	10004121
CLEC20A_chr1_178474240_178501964	1/0	c0001	1203	205	53	47	76	10	18	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/1	c0002	1203	63	30	17	11	2	2	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0003	1203	20	0	5	11	0	4	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0004	1203	7	3	3	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0005	1203	4	4	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0006	1203	1	0	0	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0007	1203	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0009	1203	1	0	1	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0011	1203	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0012	1203	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0013	1203	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0014	1203	1	0	0	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0015	1203	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0016	1203	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0017	1203	1	1	0	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0018	1203	1	0	1	0	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0019	1203	1	0	0	0	0	1	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC20A_chr1_178474240_178501964	0/0	c0020	1203	1	0	0	1	0	0	copy fasta	CLEC20A	chr1	178474240	178501964
CLEC2A_chr12_9908227_9937370	1/0	c0001	525	214	31	22	138	3	19	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/1	c0002	525	198	51	44	65	13	24	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0003	525	9	8	1	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0004	525	2	2	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0005	525	2	2	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0006	525	2	0	0	2	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0007	525	2	1	1	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0008	525	2	0	1	0	0	1	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0009	525	1	0	0	0	0	1	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0010	525	1	0	0	1	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0011	525	1	0	0	0	0	1	copy fasta	CLEC2A	chr12	9908227	9937370