Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM28_chr8_24289069_24364014	0/0	c0007	2328	4	2	2	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0008	2328	4	4	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0009	2328	3	0	0	3	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0010	2328	2	2	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0011	2328	2	2	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0012	2328	2	0	0	1	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0013	2328	2	2	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0014	2328	1	0	0	0	1	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0015	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0016	2328	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0017	2328	1	0	1	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0018	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0019	2328	1	0	1	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0020	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0021	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0022	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0023	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0024	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0025	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0026	2328	1	0	0	0	1	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0027	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0028	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0029	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0030	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0031	2328	1	0	0	0	0	1	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0032	2328	1	1	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0033	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0034	2328	1	0	0	1	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM29_chr4_174913358_174983180	1/1	c0001	2463	197	39	46	74	5	31	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0002	2517	55	5	13	30	1	6	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0003	2463	32	0	1	26	0	5	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0004	2463	25	21	4	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0005	2517	4	4	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0006	2463	2	2	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0007	2463	2	2	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0008	2463	2	2	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0009	2463	2	2	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0010	2463	2	0	2	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0011	2463	1	0	0	1	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0012	2463	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0013	2463	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0014	2463	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0015	2517	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0016	2463	1	1	0	0	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM29_chr4_174913358_174983180	0/0	c0017	2463	1	0	0	1	0	0	copy fasta	ADAM29	chr4	174913358	174983180
ADAM2_chr8_39738735_39843227	0/1	c0001	2208	295	79	59	118	12	26	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0002	2208	7	7	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0003	2208	4	0	0	4	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0004	2208	2	2	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0005	2208	2	2	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227