JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC2A_chr12_9908227_9937370	0/0	c0012	525	1	1	0	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2A_chr12_9908227_9937370	0/0	c0013	525	1	0	1	0	0	0	copy fasta	CLEC2A	chr12	9908227	9937370
CLEC2B_chr12_9847369_9874354	1/1	c0001	450	454	98	78	210	18	48	copy fasta	CLEC2B	chr12	9847369	9874354
CLEC2D_chr12_9664713_9704553	1/1	c0001	576	187	30	38	89	4	24	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0002	576	128	8	22	79	5	14	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0003	576	40	29	9	0	1	1	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0004	576	15	11	3	0	1	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0005	576	7	6	0	0	1	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0006	576	6	4	0	0	0	2	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0007	576	3	0	0	0	0	3	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2D_chr12_9664713_9704553	0/0	c0008	576	2	0	0	2	0	0	copy fasta	CLEC2D	chr12	9664713	9704553
CLEC2L_chr7_139518685_139549985	1/1	c0001	645	275	69	59	100	10	35	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0002	645	9	9	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0003	645	8	8	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0004	645	4	4	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0005	645	2	1	1	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0006	645	2	0	0	0	0	2	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0007	645	2	2	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0008	645	2	0	2	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0009	645	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0010	645	1	0	0	0	0	1	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0011	645	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC2L_chr7_139518685_139549985	0/0	c0012	645	1	1	0	0	0	0	copy fasta	CLEC2L	chr7	139518685	139549985
CLEC3A_chr16_78017548_78037101	1/0	c0001	594	292	87	48	124	12	20	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/1	c0002	594	83	3	17	40	5	17	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	c0003	594	68	5	14	43	1	5	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	c0004	594	2	2	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	c0005	594	1	0	0	1	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	c0006	594	1	0	1	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3A_chr16_78017548_78037101	0/0	c0007	594	1	1	0	0	0	0	copy fasta	CLEC3A	chr16	78017548	78037101
CLEC3B_chr3_45021303_45041071	0/0	c0001	609	182	21	33	97	6	25	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	1/1	c0002	609	170	56	43	46	10	13	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	0/0	c0003	609	23	17	2	0	0	4	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC3B_chr3_45021303_45041071	0/0	c0004	609	1	0	0	1	0	0	copy fasta	CLEC3B	chr3	45021303	45041071
CLEC4A_chr12_8118617_8143607	0/1	c0001	714	219	30	44	114	8	22	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	1/0	c0002	714	218	53	37	93	6	28	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0003	714	6	4	2	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0004	714	6	6	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0005	714	2	1	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0006	714	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0007	714	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0008	714	1	0	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0009	714	1	0	0	1	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0010	714	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0011	714	1	1	0	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4A_chr12_8118617_8143607	0/0	c0012	714	1	0	1	0	0	0	copy fasta	CLEC4A	chr12	8118617	8143607
CLEC4C_chr12_7724383_7752375	1/1	c0001	642	334	78	45	161	9	39	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	c0002	642	94	3	32	47	5	7	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	c0003	642	15	12	3	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	c0004	642	2	2	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375