JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC4C_chr12_7724383_7752375	0/0	c0005	642	2	2	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4C_chr12_7724383_7752375	0/0	c0006	642	1	1	0	0	0	0	copy fasta	CLEC4C	chr12	7724383	7752375
CLEC4D_chr12_8508503_8527366	1/1	c0001	648	269	32	55	137	14	29	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	c0002	648	109	48	19	28	2	12	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	c0003	648	9	8	0	1	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	c0004	648	7	7	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	c0005	648	7	0	0	6	0	1	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4D_chr12_8508503_8527366	0/0	c0006	648	1	1	0	0	0	0	copy fasta	CLEC4D	chr12	8508503	8527366
CLEC4E_chr12_8528305_8545905	1/1	c0001	660	437	95	80	199	16	45	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	c0002	660	2	2	0	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	c0003	660	1	0	0	1	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	c0004	660	1	1	0	0	0	0	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4E_chr12_8528305_8545905	0/0	c0005	660	1	0	0	0	0	1	copy fasta	CLEC4E	chr12	8528305	8545905
CLEC4F_chr2_70803643_70825599	0/0	c0001	1770	145	3	21	103	5	13	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	1/0	c0002	1770	144	29	37	49	7	21	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0003	1770	57	14	8	32	0	3	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0004	1770	13	12	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0005	1770	8	7	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0006	1770	8	8	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0007	1770	6	6	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/1	c0008	1770	5	0	2	0	1	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0009	1770	4	3	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0010	1770	3	0	0	3	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0011	1770	2	2	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0012	1770	2	1	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0013	1770	2	0	0	0	2	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0014	1770	2	2	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0015	1770	1	0	0	0	0	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0016	1770	1	0	0	1	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0017	1770	1	0	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0018	1770	1	0	0	0	1	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0019	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0020	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0021	1770	1	0	1	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0022	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0023	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0024	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0025	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0026	1770	1	1	0	0	0	0	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4F_chr2_70803643_70825599	0/0	c0027	1770	1	0	0	0	0	1	copy fasta	CLEC4F	chr2	70803643	70825599
CLEC4G_chr19_7723957_7737110	1/1	c0001	882	377	65	67	186	11	46	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0002	882	21	18	3	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0003	882	11	11	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0004	882	7	0	0	6	1	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0005	882	4	1	2	0	1	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0006	882	3	0	0	0	1	2	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0007	882	2	2	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0008	882	2	0	0	2	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0009	882	2	2	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4G_chr19_7723957_7737110	0/0	c0010	882	2	0	2	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110