JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC4G_chr19_7723957_7737110	0/0	c0011	882	1	1	0	0	0	0	copy fasta	CLEC4G	chr19	7723957	7737110
CLEC4M_chr19_7758243_7774605	1/1	c0001	1200	279	58	34	151	8	26	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0002	1062	82	1	33	35	5	8	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0003	1338	27	1	2	21	0	3	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0004	1131	18	1	8	7	1	1	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0005	1131	18	17	0	0	0	1	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0006	1131	16	16	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0007	1062	2	2	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0008	1269	2	0	0	0	0	2	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0009	1200	2	0	0	0	0	2	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0010	993	2	0	0	0	2	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0011	1200	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0012	1062	1	1	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0013	1062	1	0	0	0	0	1	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0014	1062	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0015	1200	1	1	0	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0016	1200	1	0	1	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0017	1200	1	0	1	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0018	1200	1	0	1	0	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0019	1338	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0020	1338	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0021	1200	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC4M_chr19_7758243_7774605	0/0	c0022	1062	1	0	0	1	0	0	copy fasta	CLEC4M	chr19	7758243	7774605
CLEC5A_chr7_141922357_141951974	1/0	c0001	567	376	79	73	165	16	42	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	c0002	567	3	0	0	3	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	c0003	567	3	3	0	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/1	c0004	567	3	0	2	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC5A_chr7_141922357_141951974	0/0	c0005	567	1	0	1	0	0	0	copy fasta	CLEC5A	chr7	141922357	141951974
CLEC6A_chr12_8450962_8483330	1/1	c0001	630	316	77	63	126	12	36	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	c0002	630	9	6	3	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	c0003	630	4	4	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	c0004	630	2	2	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	c0005	630	2	2	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC6A_chr12_8450962_8483330	0/0	c0006	630	1	1	0	0	0	0	copy fasta	CLEC6A	chr12	8450962	8483330
CLEC7A_chr12_10111777_10135199	1/1	c0001	744	432	86	74	215	16	39	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	c0002	744	7	0	3	1	0	3	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	c0003	744	5	4	1	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	c0004	744	3	3	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	c0005	744	2	0	0	0	0	2	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC7A_chr12_10111777_10135199	0/0	c0006	744	1	1	0	0	0	0	copy fasta	CLEC7A	chr12	10111777	10135199
CLEC9A_chr12_10025682_10071031	1/0	c0001	726	237	60	29	124	5	18	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/1	c0002	726	109	14	32	38	5	19	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	c0003	726	38	3	1	33	0	1	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	c0004	726	20	17	3	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	c0005	726	1	0	1	0	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLEC9A_chr12_10025682_10071031	0/0	c0006	726	1	0	0	1	0	0	copy fasta	CLEC9A	chr12	10025682	10071031
CLGN_chr4_140383453_140432648	1/0	c0001	1833	272	71	54	107	9	30	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0002	1833	52	4	10	34	1	3	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/1	c0003	1833	14	11	1	0	1	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0004	1833	5	0	2	0	0	3	copy fasta	CLGN	chr4	140383453	140432648