JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLGN_chr4_140383453_140432648	0/0	c0005	1833	4	0	3	0	1	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0006	1833	3	3	0	0	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0007	1833	2	0	2	0	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0008	1833	2	0	0	0	0	2	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0009	1833	2	0	0	0	0	2	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0010	1833	1	1	0	0	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLGN_chr4_140383453_140432648	0/0	c0011	1833	1	0	0	1	0	0	copy fasta	CLGN	chr4	140383453	140432648
CLHC1_chr2_55167547_55237293	0/0	c0001	1761	128	34	19	61	4	10	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0002	1761	71	7	9	47	1	7	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0003	1761	63	34	8	11	4	6	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0004	1761	40	3	20	8	1	8	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0005	1761	25	0	3	19	2	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	1/0	c0006	1761	21	0	2	11	3	4	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0007	1761	11	0	0	11	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0008	1761	10	0	0	10	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0009	1761	10	2	1	4	1	2	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/1	c0010	1761	4	0	2	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0011	1761	2	2	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0012	1761	2	1	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0013	1761	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0014	1761	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0015	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0016	1761	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0017	1761	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0018	1761	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0019	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0020	1761	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0021	1761	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0022	1761	1	0	0	0	0	1	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0023	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0024	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0025	1761	1	1	0	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0026	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0027	1761	1	0	1	0	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0028	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLHC1_chr2_55167547_55237293	0/0	c0029	1761	1	0	0	1	0	0	copy fasta	CLHC1	chr2	55167547	55237293
CLIC1_chr6_31725599_31741530	0/1	c0001	726	381	87	77	158	17	41	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	c0002	723	12	1	0	9	1	1	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	c0003	726	1	0	0	1	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC1_chr6_31725599_31741530	0/0	c0004	726	1	0	1	0	0	0	copy fasta	CLIC1	chr6	31725599	31741530
CLIC2_chrX_155271211_155339614	1/1	c0001	744	257	72	47	102	9	25	copy fasta	CLIC2	chrX	155271211	155339614
CLIC2_chrX_155271211_155339614	0/0	c0002	746	1	0	0	1	0	0	copy fasta	CLIC2	chrX	155271211	155339614
CLIC3_chr9_136989608_137001568	1/1	c0001	711	362	75	74	157	12	42	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0002	711	11	10	1	0	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0003	711	9	0	0	9	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0004	711	4	0	0	4	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0005	711	3	0	0	3	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0006	711	3	0	1	0	2	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0007	711	2	2	0	0	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0008	711	2	0	0	2	0	0	copy fasta	CLIC3	chr9	136989608	137001568