JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLIC3_chr9_136989608_137001568	0/0	c0009	711	1	1	0	0	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC3_chr9_136989608_137001568	0/0	c0010	711	1	0	0	1	0	0	copy fasta	CLIC3	chr9	136989608	137001568
CLIC4_chr1_24740447_24849321	1/1	c0001	762	343	85	68	148	14	26	copy fasta	CLIC4	chr1	24740447	24849321
CLIC4_chr1_24740447_24849321	0/0	c0002	762	1	1	0	0	0	0	copy fasta	CLIC4	chr1	24740447	24849321
CLIC5_chr6_45893456_46020860	1/1	c0001	756	330	84	65	140	13	26	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0002	756	3	0	0	3	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0003	756	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0004	756	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0005	756	1	0	0	0	1	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0006	756	1	1	0	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0007	756	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0008	756	1	0	0	1	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC5_chr6_45893456_46020860	0/0	c0009	756	1	0	1	0	0	0	copy fasta	CLIC5	chr6	45893456	46020860
CLIC6_chr21_34663994_34723223	0/1	c0001	2061	153	20	31	78	8	15	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0002	2031	57	11	12	28	1	5	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0003	2061	34	18	8	3	4	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0004	2031	13	0	5	1	1	6	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0005	2061	5	4	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0006	2061	4	2	2	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0007	2061	4	4	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0008	2061	4	3	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0009	2031	3	3	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0010	2061	3	0	0	3	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0011	2061	3	3	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0012	2061	3	3	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0013	2061	3	2	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0014	2061	2	2	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0015	2031	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0016	2061	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	1/0	c0017	2061	1	0	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0018	2061	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0019	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0020	2031	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0021	2031	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0022	2031	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0023	2031	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0024	2031	1	0	0	1	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0025	2031	1	0	0	0	0	1	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0026	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0027	2061	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0028	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0029	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0030	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0031	2061	1	0	1	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0032	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0033	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLIC6_chr21_34663994_34723223	0/0	c0035	2061	1	1	0	0	0	0	copy fasta	CLIC6	chr21	34663994	34723223
CLINT1_chr5_157780747_157864145	1/1	c0001	1878	321	74	59	141	16	29	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	c0002	1878	13	13	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145