JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLINT1_chr5_157780747_157864145	0/0	c0003	1878	1	0	0	0	0	1	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	c0004	1878	1	1	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	c0005	1878	1	0	1	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	c0006	1878	1	1	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	c0007	1878	1	0	0	1	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLINT1_chr5_157780747_157864145	0/0	c0008	1878	1	1	0	0	0	0	copy fasta	CLINT1	chr5	157780747	157864145
CLIP1_chr12_122266469_122427669	1/0	c0001	4317	143	64	17	40	7	14	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0002	4317	65	4	16	28	3	14	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/1	c0003	4317	6	0	1	0	3	1	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0004	4317	5	5	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0005	4317	2	2	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0006	4317	2	0	2	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0007	4317	2	0	0	0	0	2	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0008	4317	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0009	4317	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0010	4317	1	1	0	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0011	4317	1	0	0	1	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0012	4317	1	0	0	1	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0013	4317	1	0	1	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0014	4317	1	0	0	0	1	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0015	4317	1	0	0	0	0	1	copy fasta	CLIP1	chr12	122266469	122427669
CLIP1_chr12_122266469_122427669	0/0	c0016	4317	1	0	1	0	0	0	copy fasta	CLIP1	chr12	122266469	122427669
CLIP2_chr7_74284407_74410935	0/0	c0001	3141	127	47	23	43	0	14	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/1	c0002	3141	99	22	22	31	5	18	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0003	3141	12	4	2	5	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0004	3141	7	0	0	5	0	2	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	1/0	c0005	3141	6	0	4	0	1	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0006	3141	5	4	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0007	3141	5	5	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0008	3141	3	2	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0009	3141	2	0	2	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0010	3141	1	0	0	0	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0011	3141	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0012	3141	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0013	3141	1	0	0	0	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0014	3141	1	0	0	0	0	1	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0015	3141	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0016	3141	1	1	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0017	3141	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0018	3141	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0019	3141	1	1	0	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0020	3141	1	0	1	0	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP2_chr7_74284407_74410935	0/0	c0021	3141	1	0	0	1	0	0	copy fasta	CLIP2	chr7	74284407	74410935
CLIP3_chr19_36009660_36037873	1/1	c0001	1644	394	88	77	164	16	47	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0002	1644	7	0	0	7	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0003	1644	2	2	0	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0004	1644	2	1	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0005	1644	2	0	2	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0006	1644	2	0	0	2	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0007	1644	1	0	0	0	0	1	copy fasta	CLIP3	chr19	36009660	36037873