JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLK3_chr15_74610836_74635201	0/0	c0004	1473	1	0	0	1	0	0	copy fasta	CLK3	chr15	74610836	74635201
CLK3_chr15_74610836_74635201	0/0	c0005	1473	1	0	0	1	0	0	copy fasta	CLK3	chr15	74610836	74635201
CLK3_chr15_74610836_74635201	0/0	c0006	1473	1	1	0	0	0	0	copy fasta	CLK3	chr15	74610836	74635201
CLK3_chr15_74610836_74635201	0/0	c0007	1473	1	0	0	0	0	1	copy fasta	CLK3	chr15	74610836	74635201
CLK4_chr5_178597664_178632050	1/1	c0001	1446	378	97	66	162	12	39	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	c0002	1446	3	0	1	2	0	0	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	c0003	1446	1	0	1	0	0	0	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	c0004	1446	1	1	0	0	0	0	copy fasta	CLK4	chr5	178597664	178632050
CLK4_chr5_178597664_178632050	0/0	c0005	1446	1	0	0	0	0	1	copy fasta	CLK4	chr5	178597664	178632050
CLMN_chr14_95176940_95324908	1/1	c0001	3009	160	47	39	35	10	27	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0002	3009	35	4	7	19	0	5	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0003	3009	34	6	7	15	2	4	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0004	3009	9	9	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0005	3009	8	1	0	7	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0006	3009	6	5	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0007	3009	4	4	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0008	3009	4	2	2	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0009	3009	3	2	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0010	3009	2	2	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0011	3009	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0012	3009	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0013	3009	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0014	3009	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0015	3009	1	0	0	1	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0016	3009	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0017	3009	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0018	3009	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0019	3009	1	0	0	0	0	1	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0020	3009	1	0	1	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMN_chr14_95176940_95324908	0/0	c0021	3009	1	1	0	0	0	0	copy fasta	CLMN	chr14	95176940	95324908
CLMP_chr11_123064872_123200248	1/1	c0001	1122	223	75	52	58	11	25	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	c0002	1122	17	0	3	11	0	3	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	c0003	1122	9	9	0	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	c0004	1122	2	0	0	2	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	c0005	1122	1	0	0	1	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	c0006	1122	1	0	1	0	0	0	copy fasta	CLMP	chr11	123064872	123200248
CLMP_chr11_123064872_123200248	0/0	c0007	1122	1	0	0	0	1	0	copy fasta	CLMP	chr11	123064872	123200248
CLN3_chr16_28472279_28497074	1/1	c0001	1317	286	54	55	126	10	39	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0002	1317	57	30	3	21	0	3	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0003	1317	8	0	1	7	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0004	1317	4	4	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0005	1317	1	1	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0006	1317	1	0	0	1	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0007	1317	1	0	1	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0008	1317	1	1	0	0	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN3_chr16_28472279_28497074	0/0	c0009	1317	1	0	0	1	0	0	copy fasta	CLN3	chr16	28472279	28497074
CLN5_chr13_76987081_77010117	1/1	c0001	1077	279	49	50	134	11	33	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0002	1077	94	34	13	43	1	3	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0003	1077	33	0	2	30	1	0	copy fasta	CLN5	chr13	76987081	77010117
CLN5_chr13_76987081_77010117	0/0	c0004	1077	17	11	6	0	0	0	copy fasta	CLN5	chr13	76987081	77010117