JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLOCK_chr4_55422903_55551909	0/0	c0009	2541	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0010	2541	1	1	0	0	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0011	2541	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0012	2541	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0013	2541	1	0	0	0	0	1	copy fasta	CLOCK	chr4	55422903	55551909
CLOCK_chr4_55422903_55551909	0/0	c0014	2541	1	0	0	1	0	0	copy fasta	CLOCK	chr4	55422903	55551909
CLP1_chr11_57652762_57666865	1/1	c0001	1278	322	90	68	103	16	43	copy fasta	CLP1	chr11	57652762	57666865
CLP1_chr11_57652762_57666865	0/0	c0002	1278	4	4	0	0	0	0	copy fasta	CLP1	chr11	57652762	57666865
CLP1_chr11_57652762_57666865	0/0	c0003	1278	4	0	0	4	0	0	copy fasta	CLP1	chr11	57652762	57666865
CLP1_chr11_57652762_57666865	0/0	c0004	1278	1	0	0	0	0	1	copy fasta	CLP1	chr11	57652762	57666865
CLP1_chr11_57652762_57666865	0/0	c0005	1278	1	0	0	1	0	0	copy fasta	CLP1	chr11	57652762	57666865
CLPB_chr11_72280495_72439531	1/1	c0001	2124	148	53	29	51	5	8	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0002	2124	40	16	7	14	3	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0003	2124	7	7	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0004	2124	2	0	0	2	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0005	2124	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0006	2124	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0007	2124	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0008	2124	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0009	2124	1	0	1	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0010	2124	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0011	2124	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0012	2124	1	0	0	1	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPB_chr11_72280495_72439531	0/0	c0013	2124	1	1	0	0	0	0	copy fasta	CLPB	chr11	72280495	72439531
CLPP_chr19_6356531_6375242	1/1	c0001	834	364	76	74	160	14	38	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	c0002	834	13	13	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	c0003	834	2	2	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPP_chr19_6356531_6375242	0/0	c0004	834	1	1	0	0	0	0	copy fasta	CLPP	chr19	6356531	6375242
CLPSL1_chr6_35776019_35793150	1/0	c0001	366	269	56	43	136	7	26	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	c0002	366	71	16	17	27	2	9	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	c0003	366	53	13	15	7	6	12	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/1	c0004	366	42	9	4	27	0	1	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	c0005	366	7	0	0	7	0	0	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	c0006	366	1	0	1	0	0	0	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL1_chr6_35776019_35793150	0/0	c0007	366	1	0	0	0	1	0	copy fasta	CLPSL1	chr6	35776019	35793150
CLPSL2_chr6_35771598_35784552	1/1	c0001	303	449	95	79	209	17	47	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	c0002	303	6	0	0	2	1	3	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	c0003	303	3	0	3	0	0	0	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	c0004	303	1	1	0	0	0	0	copy fasta	CLPSL2	chr6	35771598	35784552
CLPSL2_chr6_35771598_35784552	0/0	c0005	303	1	0	0	1	0	0	copy fasta	CLPSL2	chr6	35771598	35784552
CLPS_chr6_35789982_35802323	1/1	c0001	339	410	93	78	181	15	41	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	c0002	339	2	1	1	0	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	c0003	339	2	0	0	2	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	c0004	339	1	0	0	1	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	c0005	339	1	0	1	0	0	0	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	c0006	339	1	0	0	0	0	1	copy fasta	CLPS	chr6	35789982	35802323
CLPS_chr6_35789982_35802323	0/0	c0007	339	1	0	0	0	1	0	copy fasta	CLPS	chr6	35789982	35802323
CLPTM1L_chr5_1312752_1350099	1/1	c0001	1617	348	83	75	141	10	37	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0002	1617	6	6	0	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0003	1617	4	0	1	0	0	3	copy fasta	CLPTM1L	chr5	1312752	1350099