Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM2_chr8_39738735_39843227	0/0	c0006	2208	2	2	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0007	2208	2	0	0	2	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0008	2208	2	0	1	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0009	2208	2	0	0	0	2	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0010	2208	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0011	2208	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0012	2208	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0013	2208	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0014	2208	1	0	0	0	0	1	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0015	2208	1	1	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0016	2208	1	1	0	0	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0017	2208	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0018	2208	1	0	0	0	0	1	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0019	2071	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM2_chr8_39738735_39843227	0/0	c0020	2208	1	0	0	1	0	0	copy fasta	ADAM2	chr8	39738735	39843227
ADAM30_chr1_119888533_119901515	1/1	c0001	2373	276	33	65	140	16	20	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0002	2373	49	27	5	5	0	12	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0003	2373	40	26	3	7	0	4	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0004	2373	14	8	4	0	2	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0005	2373	2	0	0	2	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0006	2373	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0007	2373	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0008	2400	1	1	0	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0009	2373	1	1	0	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0010	2373	1	0	1	0	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0011	2373	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM30_chr1_119888533_119901515	0/0	c0012	2373	1	0	0	1	0	0	copy fasta	ADAM30	chr1	119888533	119901515
ADAM32_chr8_39102734_39289917	0/0	c0001	2364	130	15	41	53	9	12	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/1	c0002	2364	69	1	14	44	3	6	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0003	2364	23	19	1	3	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0004	2364	10	10	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0005	2364	7	5	0	2	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0006	2364	4	4	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0007	2364	4	4	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0008	2364	3	3	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0009	2364	2	2	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0010	2364	1	1	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0011	2364	1	1	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0012	2364	1	0	1	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0013	2364	1	1	0	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM32_chr8_39102734_39289917	0/0	c0014	2364	1	0	1	0	0	0	copy fasta	ADAM32	chr8	39102734	39289917
ADAM33_chr20_3662975_3687010	1/0	c0001	2442	265	17	55	156	9	27	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0002	2442	38	8	4	13	5	8	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0003	2434	21	2	4	11	0	4	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0004	2442	18	18	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0005	2442	18	0	9	1	3	5	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0006	2442	14	14	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0007	2442	9	5	0	4	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0008	2442	7	0	0	7	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0009	2434	7	1	6	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010