JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLPTM1L_chr5_1312752_1350099	0/0	c0004	1617	3	3	0	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0005	1617	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0006	1617	1	0	1	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0007	1617	1	0	0	0	0	1	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0008	1617	1	1	0	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0009	1617	1	0	1	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0010	1617	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0012	1617	1	0	0	0	0	1	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1L_chr5_1312752_1350099	0/0	c0013	1617	1	0	0	1	0	0	copy fasta	CLPTM1L	chr5	1312752	1350099
CLPTM1_chr19_44950380_44998341	0/1	c0001	2010	148	28	23	74	5	17	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0002	2010	142	27	36	60	4	15	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	1/0	c0003	2010	45	14	9	18	3	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0004	2010	6	6	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0005	2010	5	4	1	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0006	2010	5	4	1	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0007	2010	2	0	0	2	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0008	2010	2	0	0	0	0	2	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0009	2010	2	2	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0010	2010	2	0	2	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0011	2010	2	0	2	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0012	2010	2	0	0	0	0	2	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0013	2010	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0014	2010	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0015	2010	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0016	2010	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0017	2010	1	0	0	0	0	1	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0018	2010	1	0	0	0	0	1	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0019	2010	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0020	2010	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0021	2010	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0022	2010	1	1	0	0	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPTM1_chr19_44950380_44998341	0/0	c0023	2010	1	0	0	1	0	0	copy fasta	CLPTM1	chr19	44950380	44998341
CLPX_chr15_65143219_65190342	1/1	c0001	1902	187	85	45	25	12	18	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	c0002	1902	1	0	0	1	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	c0003	1902	1	0	1	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLPX_chr15_65143219_65190342	0/0	c0004	1902	1	1	0	0	0	0	copy fasta	CLPX	chr15	65143219	65190342
CLRN1_chr3_150921567_150977727	1/0	c0001	699	317	69	52	151	14	30	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/1	c0002	699	70	5	12	41	2	9	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	c0003	699	13	11	1	0	0	1	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	c0004	699	3	0	0	3	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	c0005	699	2	0	0	2	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	c0006	699	1	1	0	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	c0007	699	1	0	1	0	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN1_chr3_150921567_150977727	0/0	c0008	699	1	0	0	1	0	0	copy fasta	CLRN1	chr3	150921567	150977727
CLRN2_chr4_17510165_17532104	0/1	c0001	699	355	76	67	165	13	33	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0002	699	34	0	7	16	5	6	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0003	699	22	0	0	21	0	1	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0004	699	14	8	2	0	0	4	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	1/0	c0005	699	10	9	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104