JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLRN2_chr4_17510165_17532104	0/0	c0006	699	2	2	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0007	699	1	1	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0008	699	1	1	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0009	699	1	1	0	0	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0010	699	1	0	0	1	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN2_chr4_17510165_17532104	0/0	c0011	699	1	0	0	1	0	0	copy fasta	CLRN2	chr4	17510165	17532104
CLRN3_chr10_127872841_127897941	1/1	c0001	681	424	89	72	208	12	41	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0002	681	17	3	8	0	5	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0003	681	4	4	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0004	681	3	0	1	0	1	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0005	681	2	0	0	0	0	2	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0006	681	1	0	0	0	0	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0007	681	1	0	1	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0008	681	1	0	0	0	0	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0009	681	1	0	0	0	0	1	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0010	681	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLRN3_chr10_127872841_127897941	0/0	c0011	681	1	1	0	0	0	0	copy fasta	CLRN3	chr10	127872841	127897941
CLSPN_chr1_35727112_35774978	0/0	c0001	4020	148	54	18	69	1	6	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	1/0	c0002	4020	97	19	21	35	3	18	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0003	4020	11	10	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0004	4017	8	0	2	0	2	4	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0005	4020	5	5	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0006	4020	3	3	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/1	c0007	4020	3	0	1	0	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0008	4020	3	0	0	3	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0009	4020	3	0	0	2	0	1	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0010	4020	2	0	0	2	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0011	4020	2	0	0	2	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0012	4020	1	0	0	1	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0013	4020	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0014	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0015	4020	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0016	4020	1	0	1	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0017	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0018	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0019	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0020	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0021	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSPN_chr1_35727112_35774978	0/0	c0022	4020	1	1	0	0	0	0	copy fasta	CLSPN	chr1	35727112	35774978
CLSTN1_chr1_9723926_9828965	1/1	c0001	2946	139	30	39	48	6	14	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0002	2946	74	22	10	29	2	11	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0003	2946	30	25	4	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0004	2946	8	0	1	7	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0005	2946	2	0	2	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0006	2946	2	1	1	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0007	2946	2	0	0	2	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0008	2946	2	0	0	2	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0009	2946	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0010	2946	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0011	2946	1	0	0	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965