JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLSTN1_chr1_9723926_9828965	0/0	c0012	2946	1	0	1	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0013	2946	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0014	2946	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0015	2946	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0016	2946	1	0	0	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0017	2946	1	1	0	0	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0018	2946	1	0	0	0	0	1	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN1_chr1_9723926_9828965	0/0	c0019	2946	1	0	0	1	0	0	copy fasta	CLSTN1	chr1	9723926	9828965
CLSTN2_chr3_139930185_140582397	0/0	c0001	2868	36	22	7	5	0	2	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0002	2868	21	14	3	2	0	2	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0003	2868	9	2	6	0	0	1	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0004	2868	6	0	1	4	0	1	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0005	2868	5	4	1	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0006	2868	4	3	1	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0007	2868	3	1	1	1	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0008	2868	3	1	2	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0009	2868	3	3	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0010	2868	3	0	2	0	0	1	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0011	2868	2	1	1	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0012	2862	2	2	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0013	2862	2	2	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0014	2868	1	0	1	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0015	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0016	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0017	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0018	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0019	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0020	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0021	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0022	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0023	2868	1	1	0	0	0	0	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN2_chr3_139930185_140582397	0/0	c0024	2868	1	0	0	0	0	1	copy fasta	CLSTN2	chr3	139930185	140582397
CLSTN3_chr12_7125371_7163945	1/1	c0001	2871	324	72	57	150	14	29	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0002	2871	37	2	4	21	2	8	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0003	2871	6	6	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0004	2871	5	3	1	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0005	2871	4	2	1	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0006	2871	2	0	2	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0007	2871	1	0	0	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0008	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0009	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0010	2871	1	0	0	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0011	2871	1	0	0	0	0	1	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0012	2871	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0013	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0014	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0015	2871	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0016	2871	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0017	2871	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0018	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945