JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLSTN3_chr12_7125371_7163945	0/0	c0019	2871	1	0	1	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0020	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0021	2871	1	1	0	0	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLSTN3_chr12_7125371_7163945	0/0	c0022	2871	1	0	0	1	0	0	copy fasta	CLSTN3	chr12	7125371	7163945
CLTA_chr9_36185921_36217059	1/1	c0001	657	336	79	69	142	10	34	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	c0002	657	61	13	6	32	2	8	copy fasta	CLTA	chr9	36185921	36217059
CLTA_chr9_36185921_36217059	0/0	c0003	657	3	0	3	0	0	0	copy fasta	CLTA	chr9	36185921	36217059
CLTB_chr5_176387501_176421539	1/1	c0001	690	404	92	68	188	14	40	copy fasta	CLTB	chr5	176387501	176421539
CLTB_chr5_176387501_176421539	0/0	c0002	690	2	2	0	0	0	0	copy fasta	CLTB	chr5	176387501	176421539
CLTCL1_chr22_19174473_19296719	0/1	c0001	4923	76	14	21	27	5	8	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0002	4923	71	7	8	49	1	6	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0003	4923	64	31	7	21	1	4	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	1/0	c0004	4923	41	4	17	9	3	7	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0005	4923	21	19	2	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0006	4923	13	1	8	3	1	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0007	4923	13	0	0	13	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0008	4923	7	0	0	7	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0009	4923	6	5	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0010	4923	4	0	0	4	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0011	4923	2	0	0	0	2	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0012	4923	2	1	0	0	0	1	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0013	4923	2	0	0	2	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0014	4913	2	0	1	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0015	4923	2	0	2	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0016	4923	2	0	0	0	0	2	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0017	4923	1	0	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0018	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0019	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0020	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0021	4923	1	0	0	0	0	1	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0022	4923	1	0	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0023	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0024	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0025	4923	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0026	4923	1	0	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0027	4923	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0028	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0029	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0030	4923	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0031	4923	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0032	4923	1	0	0	0	1	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0033	4923	1	0	0	0	0	1	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	c0034	4673	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTC_chr17_59614895_59701956	1/1	c0001	5028	254	86	35	91	4	36	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	c0002	5028	4	0	4	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	c0003	5028	1	0	0	1	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	c0004	5028	1	0	1	0	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTRN_chrX_15622318_15669805	1/1	c0001	669	294	69	56	130	11	26	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	c0002	669	1	1	0	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLUAP1_chr16_3496004_3544048	1/1	c0001	1242	230	58	42	95	12	21	copy fasta	CLUAP1	chr16	3496004	3544048