JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLUAP1_chr16_3496004_3544048	0/0	c0002	1242	65	3	17	23	4	18	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0003	1242	39	1	6	29	0	3	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0004	1242	18	5	0	11	0	2	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0005	1242	11	11	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0006	1242	6	5	0	0	0	1	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0007	1242	4	4	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0008	1242	2	0	0	2	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0009	1242	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0010	1242	1	0	0	0	0	1	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0011	1242	1	0	1	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0012	1242	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0013	1242	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0014	1242	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	c0015	1242	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUH_chr17_2684387_2716764	0/0	c0001	4047	148	11	40	72	5	20	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0002	4047	85	3	11	50	6	15	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0003	4047	57	24	9	20	1	3	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	1/0	c0004	4047	33	22	1	5	3	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0005	4047	28	6	5	16	1	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0006	4047	11	0	0	10	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0007	4047	8	8	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0008	4047	6	3	0	2	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0009	4047	5	0	0	5	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0010	4047	5	5	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0011	4047	2	0	0	2	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0012	4047	2	2	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0013	4047	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0014	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0015	4047	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0016	4047	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0017	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0018	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0019	4047	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0020	4047	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0021	4047	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0022	4047	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0023	4047	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0024	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0025	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0026	4021	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0027	4047	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0028	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0029	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0030	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0031	4047	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0032	4047	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0033	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0034	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0035	4047	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/1	c0036	4047	1	0	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764