JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLYBL_chr13_99601690_99897570	0/0	c0006	1023	2	0	1	1	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0007	998	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0008	1023	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0009	1023	1	0	0	0	0	1	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0010	1023	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0012	1023	1	0	0	0	1	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0013	1023	1	1	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570
CMA1_chr14_24500353_24513265	0/1	c0001	744	381	58	58	207	18	39	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	1/0	c0002	744	34	33	0	0	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0003	744	5	0	0	5	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0004	744	2	0	0	2	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0005	744	2	0	0	2	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0006	744	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0007	744	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0008	744	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0009	744	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0010	744	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0011	744	1	1	0	0	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0012	744	1	0	0	0	0	1	copy fasta	CMA1	chr14	24500353	24513265
CMA1_chr14_24500353_24513265	0/0	c0013	744	1	0	0	1	0	0	copy fasta	CMA1	chr14	24500353	24513265
CMAS_chr12_22041218_22070668	1/1	c0001	1305	313	87	67	112	14	31	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	c0002	1305	132	9	12	91	2	18	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	c0003	1305	2	2	0	0	0	0	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	c0004	1305	1	0	1	0	0	0	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	c0005	1305	1	0	0	0	0	1	copy fasta	CMAS	chr12	22041218	22070668
CMAS_chr12_22041218_22070668	0/0	c0006	1305	1	0	0	1	0	0	copy fasta	CMAS	chr12	22041218	22070668
CMBL_chr5_10272595_10312902	1/1	c0001	738	231	48	42	112	4	23	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	c0002	738	113	46	32	14	8	13	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	c0003	738	5	0	3	0	0	2	copy fasta	CMBL	chr5	10272595	10312902
CMBL_chr5_10272595_10312902	0/0	c0004	738	1	0	1	0	0	0	copy fasta	CMBL	chr5	10272595	10312902
CMC1_chr3_28236619_28330142	1/1	c0001	321	338	78	72	136	12	38	copy fasta	CMC1	chr3	28236619	28330142
CMC2_chr16_80961448_81011885	1/1	c0001	240	213	36	40	102	10	23	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	c0002	240	192	56	20	107	2	7	copy fasta	CMC2	chr16	80961448	81011885
CMC2_chr16_80961448_81011885	0/0	c0003	240	3	0	0	3	0	0	copy fasta	CMC2	chr16	80961448	81011885
CMC4_chrX_155056622_155076136	1/1	c0001	207	291	72	52	120	13	32	copy fasta	CMC4	chrX	155056622	155076136
CMC4_chrX_155056622_155076136	0/0	c0002	206	1	0	0	1	0	0	copy fasta	CMC4	chrX	155056622	155076136
CMIP_chr16_81439808_81716762	1/1	c0001	2322	259	83	51	87	8	28	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0002	2322	2	2	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0003	2322	2	1	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0004	2322	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0005	2322	1	0	0	1	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0006	2322	1	0	1	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0007	2322	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMIP_chr16_81439808_81716762	0/0	c0008	2322	1	1	0	0	0	0	copy fasta	CMIP	chr16	81439808	81716762
CMKLR1_chr12_108283046_108344311	1/1	c0001	1122	295	39	48	162	11	33	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0002	1122	91	53	20	0	4	14	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0003	1122	6	0	0	6	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0004	1122	2	0	1	0	1	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0005	1122	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311