JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CMKLR1_chr12_108283046_108344311	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0007	1122	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0008	1122	1	0	1	0	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0009	1122	1	0	0	1	0	0	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR1_chr12_108283046_108344311	0/0	c0010	1122	1	0	0	0	0	1	copy fasta	CMKLR1	chr12	108283046	108344311
CMKLR2_chr2_206170316_206218371	1/1	c0001	1068	177	29	25	90	11	20	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0002	1068	68	32	7	19	1	9	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0003	1068	39	13	21	0	3	2	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0004	1068	25	0	7	10	1	7	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0005	1068	3	3	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0006	1068	3	0	0	3	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0007	1068	2	1	1	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0008	1080	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0009	1068	1	0	0	1	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0010	1068	1	0	1	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0011	1068	1	1	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMKLR2_chr2_206170316_206218371	0/0	c0012	1048	1	1	0	0	0	0	copy fasta	CMKLR2	chr2	206170316	206218371
CMPK1_chr1_47328790_47383839	0/0	c0001	687	218	64	31	91	8	24	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	1/1	c0002	687	114	15	14	61	4	18	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	c0003	687	15	0	5	10	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	c0004	687	14	13	1	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK1_chr1_47328790_47383839	0/0	c0005	687	3	0	3	0	0	0	copy fasta	CMPK1	chr1	47328790	47383839
CMPK2_chr2_6843316_6870907	0/1	c0001	1350	264	60	59	95	13	36	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0002	1350	61	4	7	48	2	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0003	1350	28	2	1	24	1	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0004	1350	22	22	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0005	1350	4	0	0	4	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0006	1350	2	2	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0007	1350	1	0	0	0	0	1	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0008	1350	1	0	0	1	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0009	1350	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0010	1350	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0011	1350	1	0	1	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0012	1350	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0013	1350	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0014	1350	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	1/0	c0015	1350	1	0	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0016	1350	1	0	0	0	0	1	copy fasta	CMPK2	chr2	6843316	6870907
CMPK2_chr2_6843316_6870907	0/0	c0017	1350	1	1	0	0	0	0	copy fasta	CMPK2	chr2	6843316	6870907
CMSS1_chr3_99812862_100186732	0/0	c0001	840	196	62	33	64	9	28	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	c0002	840	35	2	13	6	2	12	copy fasta	CMSS1	chr3	99812862	100186732
CMSS1_chr3_99812862_100186732	0/0	c0003	840	1	0	0	0	1	0	copy fasta	CMSS1	chr3	99812862	100186732
CMTM1_chr16_66561439_66584135	1/1	c0001	861	254	34	49	130	13	26	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0002	861	128	51	14	56	1	6	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0003	877	5	0	5	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0004	861	3	3	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0005	861	2	2	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0006	861	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0007	861	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0008	861	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135