JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CMTM1_chr16_66561439_66584135	0/0	c0009	861	1	1	0	0	0	0	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0010	861	1	0	0	0	0	1	copy fasta	CMTM1	chr16	66561439	66584135
CMTM1_chr16_66561439_66584135	0/0	c0011	861	1	0	0	0	0	1	copy fasta	CMTM1	chr16	66561439	66584135
CMTM2_chr16_66574463_66593275	1/1	c0001	747	291	60	53	135	15	26	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0002	747	66	24	8	29	0	5	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0003	747	45	9	8	26	1	1	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0004	747	3	3	0	0	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0005	747	1	1	0	0	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0006	705	1	0	0	1	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0007	747	1	0	0	1	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0008	747	1	1	0	0	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM2_chr16_66574463_66593275	0/0	c0009	747	1	0	1	0	0	0	copy fasta	CMTM2	chr16	66574463	66593275
CMTM3_chr16_66599704_66618887	1/1	c0001	549	389	98	64	170	15	40	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	c0002	549	34	2	8	23	1	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	c0003	549	2	0	2	0	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM3_chr16_66599704_66618887	0/0	c0004	549	1	0	0	1	0	0	copy fasta	CMTM3	chr16	66599704	66618887
CMTM4_chr16_66609750_66701743	1/1	c0001	627	274	70	40	126	10	26	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	c0002	627	33	6	5	22	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	c0003	627	10	3	1	0	0	6	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	c0004	627	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	c0005	627	1	1	0	0	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM4_chr16_66609750_66701743	0/0	c0006	627	1	0	0	1	0	0	copy fasta	CMTM4	chr16	66609750	66701743
CMTM5_chr14_23372046_23384772	1/1	c0001	672	225	8	50	130	10	25	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0002	672	178	74	26	52	7	19	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0003	672	9	9	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0004	672	3	3	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0005	672	2	2	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0006	672	1	1	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0007	672	1	0	1	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0008	672	1	0	0	0	1	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0009	672	1	0	1	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM5_chr14_23372046_23384772	0/0	c0010	672	1	1	0	0	0	0	copy fasta	CMTM5	chr14	23372046	23384772
CMTM6_chr3_32476312_32507852	1/1	c0001	552	381	83	71	174	14	37	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	c0002	552	1	1	0	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	c0003	552	1	0	1	0	0	0	copy fasta	CMTM6	chr3	32476312	32507852
CMTM6_chr3_32476312_32507852	0/0	c0004	552	1	0	0	0	0	1	copy fasta	CMTM6	chr3	32476312	32507852
CMTM7_chr3_32386853_32460528	1/1	c0001	528	358	79	69	158	12	38	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	c0002	528	7	5	2	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	c0003	528	1	0	1	0	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	c0004	528	1	0	0	1	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM7_chr3_32386853_32460528	0/0	c0005	528	1	0	0	1	0	0	copy fasta	CMTM7	chr3	32386853	32460528
CMTM8_chr3_32233680_32375321	1/1	c0001	522	336	86	71	127	8	42	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	c0002	522	2	2	0	0	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	c0003	522	2	0	0	2	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	c0004	522	2	2	0	0	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	c0005	522	1	0	1	0	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTM8_chr3_32233680_32375321	0/0	c0006	522	1	0	0	1	0	0	copy fasta	CMTM8	chr3	32233680	32375321
CMTR1_chr6_37428221_37486508	1/0	c0001	2508	299	48	48	153	9	40	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/1	c0002	2508	33	25	2	0	1	4	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0003	2508	17	17	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508