JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CMTR1_chr6_37428221_37486508	0/0	c0004	2508	2	2	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0005	2508	2	0	0	2	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0006	2508	1	0	0	1	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0007	2508	1	0	0	1	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0008	2508	1	1	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0009	2508	1	1	0	0	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR1_chr6_37428221_37486508	0/0	c0010	2508	1	0	0	1	0	0	copy fasta	CMTR1	chr6	37428221	37486508
CMTR2_chr16_71276392_71294402	0/0	c0001	2313	141	16	9	98	0	18	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0002	2313	120	34	22	46	8	10	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	1/0	c0003	2313	69	2	12	50	0	4	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0004	2313	42	8	11	12	2	9	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0005	2313	27	1	14	5	2	5	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0006	2313	18	18	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0007	2313	11	10	1	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0008	2313	2	2	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0009	2313	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0010	2313	1	0	0	0	1	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0011	2313	1	1	0	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0012	2313	1	0	1	0	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0013	2313	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0014	2313	1	0	0	1	0	0	copy fasta	CMTR2	chr16	71276392	71294402
CMTR2_chr16_71276392_71294402	0/0	c0015	2313	1	0	0	0	1	0	copy fasta	CMTR2	chr16	71276392	71294402
CMYA5_chr5_79684836_79805222	1/0	c0001	12210	49	3	11	18	4	12	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0002	12210	31	0	3	26	0	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0003	12210	25	10	4	8	2	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0004	12210	14	0	1	12	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0005	12210	13	0	6	4	0	3	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0006	12210	12	0	0	11	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0007	12210	10	0	0	10	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0008	12210	10	9	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0009	12210	9	8	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0010	12210	7	1	2	1	1	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0011	12210	7	0	0	7	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0012	12210	6	0	6	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0013	12210	6	0	1	5	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0014	12210	6	0	0	6	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0015	12210	5	5	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0016	12210	5	5	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0017	12210	4	0	0	4	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0018	12210	4	0	0	4	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0019	12210	4	1	3	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0020	12210	4	0	0	4	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0021	12210	3	0	0	2	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0022	12210	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0023	12210	3	0	0	3	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0024	12210	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0025	12210	3	3	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0026	12210	3	0	2	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0027	12210	3	0	0	3	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0028	12210	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222