Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM33_chr20_3662975_3687010	0/0	c0010	2434	6	0	0	6	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0011	2442	5	5	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0012	2442	5	4	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0013	2434	4	4	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0014	2442	3	0	0	3	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0015	2442	3	0	1	0	0	2	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0016	2442	3	2	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0017	2442	2	0	0	0	0	2	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0018	2442	2	0	0	2	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0019	2442	2	1	1	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0020	2442	2	2	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0021	2442	2	2	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0022	2442	2	2	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0023	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0024	2434	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/1	c0025	2442	1	0	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0026	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0027	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0028	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0029	2434	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0030	2442	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0031	2442	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0032	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0033	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0034	2442	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0035	2434	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0036	2442	1	0	0	0	1	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0037	2434	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0038	2442	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0039	2434	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0040	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0041	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0042	2434	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0043	2434	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0044	2442	1	1	0	0	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0045	2434	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM33_chr20_3662975_3687010	0/0	c0046	2454	1	0	0	1	0	0	copy fasta	ADAM33	chr20	3662975	3687010
ADAM7_chr8_24436026_24514565	1/0	c0001	3275	129	18	22	72	6	10	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0002	3272	69	29	17	13	3	7	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/1	c0003	3272	64	5	14	30	3	11	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0004	3272	15	1	9	0	1	4	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0005	3272	10	0	5	5	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0006	3272	10	10	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0007	3273	9	0	0	9	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0008	3273	9	2	0	7	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0009	3269	7	5	2	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0010	3272	6	5	1	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0011	3272	4	4	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0012	3272	2	0	0	0	0	2	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0013	3273	2	2	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565