JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CMYA5_chr5_79684836_79805222	0/0	c0029	12210	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0030	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0031	12210	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0032	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0033	12210	2	0	1	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0034	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0035	12210	2	0	0	0	0	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0036	12210	2	0	0	0	0	2	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0037	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0038	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0039	12210	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0040	12210	2	1	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0041	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0042	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0043	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0044	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0045	12210	2	0	0	2	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0046	12210	2	2	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0047	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0048	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0049	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0050	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0051	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0052	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0053	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0054	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0055	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0056	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0057	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0058	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0059	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0060	12210	1	0	0	0	1	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0061	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0062	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0063	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0064	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0065	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0066	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0067	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0068	12210	1	0	0	0	1	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0069	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0070	12210	1	0	0	0	1	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0071	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0072	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0073	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0074	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0075	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0076	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0077	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0078	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222