JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CMYA5_chr5_79684836_79805222	0/0	c0079	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0080	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0081	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0082	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0083	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/1	c0084	12210	1	0	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0085	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0086	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0087	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0088	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0089	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0090	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0091	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0092	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0093	12210	1	0	1	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0094	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0095	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0096	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0097	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0098	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0099	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0100	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0101	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0102	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0103	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0104	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0105	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0106	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0107	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0108	12210	1	1	0	0	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0109	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0110	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0111	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0112	12210	1	0	0	0	0	1	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0113	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CMYA5_chr5_79684836_79805222	0/0	c0114	12210	1	0	0	1	0	0	copy fasta	CMYA5	chr5	79684836	79805222
CNBD1_chr8_86861415_87387859	0/0	c0001	1311	127	46	34	32	8	7	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0002	1311	7	6	1	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0003	1311	4	4	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0004	1311	4	4	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0005	1311	3	2	1	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0006	1311	2	2	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0007	1311	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0008	1311	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0009	1311	1	0	0	0	0	1	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0010	1311	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD1_chr8_86861415_87387859	0/0	c0011	1311	1	1	0	0	0	0	copy fasta	CNBD1	chr8	86861415	87387859
CNBD2_chr20_35963590_36035700	1/1	c0001	1731	135	45	27	43	8	10	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0002	1731	98	34	14	41	2	7	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0003	1731	12	0	1	0	2	9	copy fasta	CNBD2	chr20	35963590	36035700