JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNBD2_chr20_35963590_36035700	0/0	c0004	1731	3	3	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0005	1731	3	0	0	3	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0006	1731	2	1	1	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0007	1731	2	1	0	0	0	1	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0008	1731	2	0	0	2	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0009	1731	1	0	1	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0010	1731	1	0	0	0	0	1	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0011	1731	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0012	1731	1	0	0	1	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0013	1731	1	0	0	1	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0014	1731	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0015	1731	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0016	1731	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0017	1731	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0018	1731	1	0	0	1	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBD2_chr20_35963590_36035700	0/0	c0019	1731	1	1	0	0	0	0	copy fasta	CNBD2	chr20	35963590	36035700
CNBP_chr3_129162827_129188896	0/1	c0001	534	325	33	65	172	14	40	copy fasta	CNBP	chr3	129162827	129188896
CNBP_chr3_129162827_129188896	1/0	c0002	534	105	59	15	22	0	8	copy fasta	CNBP	chr3	129162827	129188896
CNDP1_chr18_74529500_74592212	0/0	c0001	1527	96	7	17	65	2	5	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0002	1527	59	6	13	30	3	7	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0003	1524	43	3	16	4	8	12	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	1/0	c0004	1524	37	17	8	4	0	7	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0005	1527	21	5	1	14	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0006	1527	13	0	2	9	2	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0007	1527	10	4	3	2	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0008	1527	9	1	0	6	1	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0009	1527	8	0	1	4	1	2	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0010	1524	7	7	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0011	1524	7	5	2	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0012	1524	6	4	2	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0013	1524	6	5	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0014	1524	6	1	1	0	0	4	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0015	1524	5	4	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0016	1527	4	1	0	2	1	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0017	1527	3	2	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0018	1527	3	1	1	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0019	1524	3	1	1	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0020	1527	3	0	0	2	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0021	1521	3	3	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0022	1527	2	1	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0023	1527	2	0	0	2	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0024	1524	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0025	1524	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0026	1524	2	0	2	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0027	1521	2	2	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0028	1527	2	0	2	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0029	1527	2	1	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0030	1527	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0031	1527	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0032	1527	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212