JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNDP1_chr18_74529500_74592212	0/0	c0033	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0034	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0035	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0036	1527	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0037	1527	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0038	1527	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0039	1527	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0040	1527	1	0	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0041	1527	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0042	1527	1	0	0	1	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/1	c0043	1527	1	0	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0044	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0045	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0046	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0047	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0048	1524	1	1	0	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0049	1524	1	0	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0050	1524	1	0	1	0	0	0	copy fasta	CNDP1	chr18	74529500	74592212
CNDP1_chr18_74529500_74592212	0/0	c0051	1524	1	0	0	0	0	1	copy fasta	CNDP1	chr18	74529500	74592212
CNDP2_chr18_74491363_74528454	1/1	c0001	1428	286	62	55	121	16	30	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0002	1428	88	9	23	44	2	10	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0003	1428	19	15	1	1	0	2	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0004	1428	8	8	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0005	1428	3	3	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0006	1428	3	0	1	1	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0007	1428	2	0	0	2	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0008	1428	2	0	0	2	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0009	1428	2	0	0	2	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0011	1428	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0012	1428	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0013	1428	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0014	1428	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0015	1428	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0016	1428	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0017	1428	1	1	0	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0018	1428	1	0	1	0	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0019	1428	1	0	0	1	0	0	copy fasta	CNDP2	chr18	74491363	74528454
CNDP2_chr18_74491363_74528454	0/0	c0020	1428	1	0	0	0	0	1	copy fasta	CNDP2	chr18	74491363	74528454
CNEP1R1_chr16_50020225_50042081	1/1	c0001	378	377	98	66	161	14	36	copy fasta	CNEP1R1	chr16	50020225	50042081
CNEP1R1_chr16_50020225_50042081	0/0	c0002	378	1	0	0	1	0	0	copy fasta	CNEP1R1	chr16	50020225	50042081
CNFN_chr19_42382019_42395297	1/1	c0001	339	267	88	42	99	9	27	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	c0002	339	4	0	1	3	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	c0003	339	1	0	0	0	1	0	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	c0004	339	1	0	0	0	0	1	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	c0005	339	1	0	1	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	c0006	339	1	1	0	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNFN_chr19_42382019_42395297	0/0	c0007	339	1	1	0	0	0	0	copy fasta	CNFN	chr19	42382019	42395297
CNGA1_chr4_47930977_48021681	1/1	c0001	2061	250	57	51	102	15	23	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	c0002	2061	93	20	8	55	0	10	copy fasta	CNGA1	chr4	47930977	48021681