JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNGA1_chr4_47930977_48021681	0/0	c0003	2061	13	12	1	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	c0004	2061	7	0	4	0	1	2	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	c0005	2061	1	0	0	1	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	c0006	2061	1	1	0	0	0	0	copy fasta	CNGA1	chr4	47930977	48021681
CNGA1_chr4_47930977_48021681	0/0	c0007	2061	1	0	0	0	0	1	copy fasta	CNGA1	chr4	47930977	48021681
CNGA2_chrX_151729746_151750564	1/1	c0001	1995	194	8	43	111	8	22	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0002	1995	39	0	6	26	3	4	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0003	1995	36	28	1	0	2	5	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0004	1995	19	6	5	7	0	1	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0005	1995	9	7	2	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0006	1995	7	7	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0007	1995	7	0	0	7	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0008	1995	4	4	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0009	1995	3	3	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0010	1995	3	2	1	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0011	1995	2	2	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0012	1996	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0013	2007	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0014	1995	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0015	1993	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0016	1995	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0017	1996	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0018	1995	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0019	1995	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0020	1995	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0021	1995	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0022	1995	1	0	0	1	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0023	1995	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA2_chrX_151729746_151750564	0/0	c0024	1995	1	1	0	0	0	0	copy fasta	CNGA2	chrX	151729746	151750564
CNGA3_chr2_98341456_98403601	1/1	c0001	2085	277	55	49	126	14	31	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0002	2085	23	9	11	1	1	1	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0003	2085	11	0	0	11	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0004	2085	6	0	0	6	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0005	2085	4	4	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0006	2085	2	2	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0007	2085	2	2	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0008	2085	2	0	0	2	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0009	2085	2	2	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0010	2085	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0011	2085	1	1	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0012	2085	1	0	1	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0013	2085	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0014	2085	1	1	0	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0015	2085	1	0	0	0	1	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0016	2085	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0017	2085	1	0	0	1	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA3_chr2_98341456_98403601	0/0	c0018	2085	1	0	1	0	0	0	copy fasta	CNGA3	chr2	98341456	98403601
CNGA4_chr11_6234089_6249479	1/1	c0001	1728	295	37	50	163	12	31	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0002	1728	50	22	10	7	3	8	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0003	1728	17	7	2	8	0	0	copy fasta	CNGA4	chr11	6234089	6249479