JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNGA4_chr11_6234089_6249479	0/0	c0004	1728	15	11	2	0	2	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0005	1728	12	11	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0006	1728	4	0	4	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0007	1728	3	0	1	0	1	1	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0008	1728	3	0	0	3	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0009	1728	2	0	0	2	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0010	1728	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0011	1728	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0012	1728	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0013	1728	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0014	1728	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0015	1728	1	0	0	1	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0016	1728	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0017	1728	1	0	1	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0018	1728	1	0	0	1	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0019	1728	1	0	0	1	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGA4_chr11_6234089_6249479	0/0	c0020	1728	1	1	0	0	0	0	copy fasta	CNGA4	chr11	6234089	6249479
CNGB1_chr16_57877340_57976128	0/0	c0001	3756	40	1	3	28	3	5	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0002	3756	36	3	10	16	1	6	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0003	3756	33	0	7	18	2	6	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0004	3756	30	3	2	23	1	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0005	3756	25	3	3	16	0	3	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/1	c0006	3756	16	2	2	9	1	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0007	3756	6	5	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0008	3756	6	0	2	4	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0009	3756	5	0	3	1	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0010	3756	5	3	0	0	2	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	1/0	c0011	3756	5	4	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0012	3756	4	1	2	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0013	3756	4	1	3	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0014	3756	3	3	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0015	3756	3	3	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0016	3756	3	3	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0017	3756	3	0	0	3	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0018	3756	3	0	0	3	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0019	3756	3	0	3	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0020	3756	3	1	0	2	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0021	3756	3	0	1	2	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0022	3756	3	2	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0023	3756	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0024	3756	2	0	2	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0025	3756	2	1	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0026	3756	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0027	3756	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0028	3756	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0029	3756	2	0	0	2	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0030	3756	2	0	2	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0031	3756	2	2	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0032	3756	2	0	0	0	1	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0033	3756	2	0	1	0	1	0	copy fasta	CNGB1	chr16	57877340	57976128