JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNGB1_chr16_57877340_57976128	0/0	c0084	3759	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0085	3759	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0086	3759	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0087	3759	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0088	3759	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0089	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0090	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0091	3756	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0092	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0093	3756	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0094	3756	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0095	3756	1	0	0	0	1	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0096	3756	1	0	0	0	1	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0097	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0098	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0099	3756	1	0	0	0	1	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0100	3756	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0101	3756	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0102	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0103	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0104	3756	1	0	0	0	0	1	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0105	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0106	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0107	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0108	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0109	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0110	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0111	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0112	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0113	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0114	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0115	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0116	3756	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0117	3756	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0118	3756	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0119	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0120	3756	1	0	1	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0121	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0122	3756	1	1	0	0	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB1_chr16_57877340_57976128	0/0	c0123	3756	1	0	0	1	0	0	copy fasta	CNGB1	chr16	57877340	57976128
CNGB3_chr8_86569179_86748634	0/0	c0001	2430	167	31	25	87	1	23	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0002	2430	40	14	8	12	1	5	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0003	2430	16	2	0	11	1	2	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/1	c0004	2430	15	3	0	10	0	1	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0005	2430	10	0	4	6	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0006	2430	9	8	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	1/0	c0007	2430	7	1	4	0	0	1	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0008	2430	6	6	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0009	2430	2	2	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0010	2430	2	0	2	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634