JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNGB3_chr8_86569179_86748634	0/0	c0011	2430	2	2	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0012	2430	2	2	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0013	2430	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0014	2430	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0015	2430	1	1	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0016	2430	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0017	2430	1	1	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0018	2430	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0019	2430	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0020	2430	1	0	1	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0021	2430	1	1	0	0	0	0	copy fasta	CNGB3	chr8	86569179	86748634
CNGB3_chr8_86569179_86748634	0/0	c0022	2430	1	0	0	0	1	0	copy fasta	CNGB3	chr8	86569179	86748634
CNIH1_chr14_54418561_54446374	1/1	c0001	435	382	96	50	192	8	34	copy fasta	CNIH1	chr14	54418561	54446374
CNIH2_chr11_66273175_66289206	1/1	c0001	483	411	85	72	196	16	40	copy fasta	CNIH2	chr11	66273175	66289206
CNIH2_chr11_66273175_66289206	0/0	c0002	483	6	4	2	0	0	0	copy fasta	CNIH2	chr11	66273175	66289206
CNIH2_chr11_66273175_66289206	0/0	c0003	483	3	1	2	0	0	0	copy fasta	CNIH2	chr11	66273175	66289206
CNIH3_chr1_224611317_224745554	1/1	c0001	483	349	81	54	156	18	38	copy fasta	CNIH3	chr1	224611317	224745554
CNIH3_chr1_224611317_224745554	0/0	c0002	483	9	9	0	0	0	0	copy fasta	CNIH3	chr1	224611317	224745554
CNIH4_chr1_224351879_224384452	1/1	c0001	420	318	92	71	92	11	50	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	c0002	420	3	3	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	c0003	420	1	0	1	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	c0004	420	1	0	0	0	1	0	copy fasta	CNIH4	chr1	224351879	224384452
CNIH4_chr1_224351879_224384452	0/0	c0005	420	1	1	0	0	0	0	copy fasta	CNIH4	chr1	224351879	224384452
CNKSR1_chr1_26172491_26194884	1/1	c0001	2142	248	42	62	106	10	26	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0002	2142	39	6	7	17	1	8	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0003	2142	18	0	0	17	0	1	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0004	2142	16	14	2	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0005	2143	10	5	2	3	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0006	2142	9	6	3	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0007	2142	9	7	2	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0008	2142	4	4	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0009	2142	4	4	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0010	2142	2	1	1	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0011	2142	1	0	0	0	1	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0012	2142	1	0	1	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0013	2142	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0014	2143	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0015	2143	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0016	2142	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0017	2143	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0018	2142	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0019	2142	1	0	0	0	0	1	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0020	2142	1	0	0	1	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0021	2142	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0022	2142	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR1_chr1_26172491_26194884	0/0	c0023	2142	1	1	0	0	0	0	copy fasta	CNKSR1	chr1	26172491	26194884
CNKSR2_chrX_21369418_21659689	1/1	c0001	3105	148	36	26	61	5	18	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	c0002	3105	8	0	2	6	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	c0003	3105	3	3	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	c0004	3105	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689