JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNKSR2_chrX_21369418_21659689	0/0	c0005	3105	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	c0006	3105	1	1	0	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR2_chrX_21369418_21659689	0/0	c0007	3105	1	0	1	0	0	0	copy fasta	CNKSR2	chrX	21369418	21659689
CNKSR3_chr6_154382515_154515685	0/0	c0001	1668	174	21	23	101	6	23	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/1	c0002	1668	117	58	19	28	3	8	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	1/0	c0003	1668	37	6	11	11	3	5	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0004	1668	6	3	3	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0005	1668	2	1	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0006	1668	2	0	2	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0007	1668	1	1	0	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0008	1668	1	0	1	0	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0009	1668	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNKSR3_chr6_154382515_154515685	0/0	c0010	1668	1	0	0	1	0	0	copy fasta	CNKSR3	chr6	154382515	154515685
CNMD_chr13_52698264_52744820	1/0	c0001	1005	297	69	69	115	14	29	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/1	c0002	1005	21	15	1	0	0	4	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0003	1005	6	0	1	4	0	1	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0004	1005	1	0	0	1	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0005	1005	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0006	1005	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0007	1005	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0008	1005	1	1	0	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNMD_chr13_52698264_52744820	0/0	c0009	1005	1	0	1	0	0	0	copy fasta	CNMD	chr13	52698264	52744820
CNN1_chr19_11533851_11555323	1/1	c0001	894	313	49	55	150	14	43	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	c0002	894	52	36	0	15	0	1	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	c0003	894	13	1	8	4	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	c0004	894	7	7	0	0	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	c0005	894	3	0	0	3	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	c0006	894	3	0	3	0	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN1_chr19_11533851_11555323	0/0	c0007	894	1	1	0	0	0	0	copy fasta	CNN1	chr19	11533851	11555323
CNN2_chr19_1021608_1044065	0/0	c0001	930	233	68	25	108	10	22	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0002	930	46	5	22	5	2	12	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	1/1	c0003	930	30	16	3	7	0	2	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0004	930	29	0	3	22	1	3	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0005	930	20	0	4	11	0	5	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0006	930	10	0	7	0	1	2	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0007	930	5	0	3	2	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0008	930	4	4	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0009	930	2	2	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0010	930	2	0	2	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0011	930	2	0	0	0	0	2	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0012	930	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0013	930	1	0	0	0	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0014	930	1	0	0	0	0	1	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0015	930	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0016	930	1	1	0	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0017	930	1	0	1	0	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN2_chr19_1021608_1044065	0/0	c0018	930	1	0	0	1	0	0	copy fasta	CNN2	chr19	1021608	1044065
CNN3_chr1_94891957_94932110	1/1	c0001	990	398	79	69	199	18	31	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	c0002	990	20	12	2	0	0	6	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	c0003	990	4	0	3	0	0	1	copy fasta	CNN3	chr1	94891957	94932110