Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM7_chr8_24436026_24514565	0/0	c0014	3269	2	2	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0015	3273	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0016	3273	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0017	3272	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0018	3275	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0019	3272	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0020	3272	1	0	1	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0021	3272	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0022	3272	1	0	1	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0023	3272	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0024	3272	1	0	0	0	1	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0025	3272	1	0	0	0	0	1	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0026	3272	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0027	3272	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0028	3272	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0029	3274	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0030	3273	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0031	3272	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0032	3273	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0033	3273	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0034	3275	1	0	0	0	0	1	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0035	3272	1	1	0	0	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM7_chr8_24436026_24514565	0/0	c0036	3275	1	0	0	1	0	0	copy fasta	ADAM7	chr8	24436026	24514565
ADAM8_chr10_133257423_133281868	0/1	c0001	2475	215	15	54	107	12	26	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0002	2475	36	26	5	0	0	5	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	1/0	c0003	2475	33	1	8	18	1	4	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0004	2475	17	13	4	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0005	2475	11	11	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0006	2475	8	7	1	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0007	2475	6	5	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0008	2475	5	5	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0009	2475	5	0	0	5	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0010	2475	5	0	5	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0011	2475	4	0	0	4	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0012	2475	3	3	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0013	2475	3	0	1	0	0	2	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0014	2475	3	0	0	3	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0015	2475	2	2	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0016	2475	2	1	1	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0017	2475	2	0	0	0	2	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0018	2475	2	0	0	2	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0019	2475	2	0	0	2	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0020	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0021	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0022	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0023	2475	1	0	0	0	0	1	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0024	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0025	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0026	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0027	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868