JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNN3_chr1_94891957_94932110	0/0	c0004	990	2	1	1	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	c0005	990	1	0	1	0	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNN3_chr1_94891957_94932110	0/0	c0006	990	1	0	0	1	0	0	copy fasta	CNN3	chr1	94891957	94932110
CNNM1_chr10_99324356_99399330	0/1	c0001	2856	254	81	34	114	4	20	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	1/0	c0002	2856	38	7	13	14	0	3	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0003	2856	8	0	6	0	2	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0004	2856	5	0	2	0	1	2	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0005	2856	3	0	0	3	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0006	2856	2	0	0	2	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0007	2856	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0008	2856	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0009	2856	1	0	0	1	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0010	2856	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0011	2856	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0012	2856	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0013	2856	1	0	1	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0014	2856	1	0	0	0	1	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0015	2856	1	0	0	0	0	1	copy fasta	CNNM1	chr10	99324356	99399330
CNNM1_chr10_99324356_99399330	0/0	c0016	2856	1	1	0	0	0	0	copy fasta	CNNM1	chr10	99324356	99399330
CNNM2_chr10_102913294_103095222	1/1	c0001	2628	114	23	28	45	4	12	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0002	2628	69	23	13	25	2	6	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0003	2628	51	4	8	29	1	9	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0004	2628	13	6	3	0	2	2	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0005	2628	8	0	0	7	0	1	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0006	2628	7	1	3	0	3	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0007	2628	3	0	0	3	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0008	2628	2	0	0	2	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0009	2628	1	0	0	1	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0010	2628	1	1	0	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM2_chr10_102913294_103095222	0/0	c0011	2628	1	0	1	0	0	0	copy fasta	CNNM2	chr10	102913294	103095222
CNNM3_chr2_96811268_96840382	1/1	c0001	2124	222	15	57	104	15	29	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0002	2124	92	65	10	13	0	4	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0003	2124	11	1	0	10	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0004	2124	9	8	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0005	2124	5	0	0	4	0	1	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0006	2124	3	0	3	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0007	2124	2	0	1	0	1	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0008	2124	2	0	0	2	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0009	2124	2	0	2	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0010	2124	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0011	2124	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0012	2124	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0013	2124	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0014	2124	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0015	2124	1	0	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0016	2124	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0017	2124	1	1	0	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0018	2124	1	0	0	1	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM3_chr2_96811268_96840382	0/0	c0019	2124	1	0	1	0	0	0	copy fasta	CNNM3	chr2	96811268	96840382
CNNM4_chr2_96755902_96816874	1/1	c0001	2328	252	74	53	93	12	18	copy fasta	CNNM4	chr2	96755902	96816874