JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNNM4_chr2_96755902_96816874	0/0	c0002	2328	9	9	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0003	2328	2	0	2	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0004	2328	2	2	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0005	2328	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0006	2328	1	0	1	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0007	2328	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0008	2328	1	0	0	1	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNNM4_chr2_96755902_96816874	0/0	c0009	2328	1	1	0	0	0	0	copy fasta	CNNM4	chr2	96755902	96816874
CNOT10_chr3_32680188_32778875	1/1	c0001	2235	343	80	69	144	14	34	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	c0002	2235	8	6	2	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	c0003	2235	1	0	0	1	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	c0004	2235	1	0	1	0	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT10_chr3_32680188_32778875	0/0	c0005	2235	1	0	0	1	0	0	copy fasta	CNOT10	chr3	32680188	32778875
CNOT11_chr2_101247886_101275316	1/1	c0001	1533	223	67	34	82	11	27	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0002	1533	139	20	31	73	6	9	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0003	1533	5	5	0	0	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0004	1533	2	0	1	0	1	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0005	1533	2	0	0	0	0	2	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0006	1533	2	0	0	2	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0007	1533	1	1	0	0	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0008	1533	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0009	1533	1	1	0	0	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0010	1533	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT11_chr2_101247886_101275316	0/0	c0011	1533	1	0	0	1	0	0	copy fasta	CNOT11	chr2	101247886	101275316
CNOT1_chr16_58514951_58634826	0/0	c0001	7131	138	32	12	70	7	17	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0002	7131	79	11	9	48	4	7	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/1	c0003	7131	43	13	14	2	5	8	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0004	7131	14	12	2	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0005	7131	6	6	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0006	7131	6	6	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0007	7131	4	0	4	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	1/0	c0008	7131	4	1	2	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0009	7131	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0010	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0011	7131	1	1	0	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0012	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0013	7131	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0014	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0015	7131	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0016	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0017	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0018	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0019	7131	1	0	1	0	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0020	7142	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0021	7131	1	0	0	0	0	1	copy fasta	CNOT1	chr16	58514951	58634826
CNOT1_chr16_58514951_58634826	0/0	c0022	7131	1	0	0	1	0	0	copy fasta	CNOT1	chr16	58514951	58634826
CNOT2_chr12_70238433_70359993	1/0	c0001	1623	129	50	33	29	5	11	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/1	c0002	1624	60	15	11	24	2	7	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	c0003	1622	51	13	7	25	1	5	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	c0004	1625	29	7	9	10	1	2	copy fasta	CNOT2	chr12	70238433	70359993