JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNOT2_chr12_70238433_70359993	0/0	c0005	1626	6	3	0	2	1	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	c0006	1623	4	4	0	0	0	0	copy fasta	CNOT2	chr12	70238433	70359993
CNOT2_chr12_70238433_70359993	0/0	c0007	1623	1	0	0	0	0	1	copy fasta	CNOT2	chr12	70238433	70359993
CNOT3_chr19_54132762_54160681	0/1	c0001	2262	125	37	23	42	7	15	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0002	2262	77	20	13	35	3	6	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0003	2262	7	0	1	6	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0004	2262	2	1	0	1	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0005	2262	2	0	0	2	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0006	2262	2	0	2	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0007	2262	1	0	0	0	0	1	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0008	2262	1	0	0	0	0	1	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0009	2262	1	0	0	1	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0010	2262	1	1	0	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0011	2262	1	1	0	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0012	2262	1	0	0	1	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0013	2262	1	0	1	0	0	0	copy fasta	CNOT3	chr19	54132762	54160681
CNOT3_chr19_54132762_54160681	0/0	c0014	2262	1	0	0	0	0	1	copy fasta	CNOT3	chr19	54132762	54160681
CNOT4_chr7_135356795_135515102	0/1	c0001	2142	240	57	47	96	9	30	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0002	2142	103	11	17	68	2	5	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	1/0	c0003	2142	6	5	0	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0004	2142	4	1	3	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0005	2142	3	0	3	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0006	2142	1	0	1	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0007	2142	1	0	0	0	1	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0008	2142	1	0	0	1	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0009	2142	1	0	0	1	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0010	2142	1	0	1	0	0	0	copy fasta	CNOT4	chr7	135356795	135515102
CNOT4_chr7_135356795_135515102	0/0	c0011	2142	1	0	0	0	0	1	copy fasta	CNOT4	chr7	135356795	135515102
CNOT6L_chr4_77708387_77824368	1/1	c0001	1668	326	89	56	135	8	36	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	c0002	1668	1	0	0	1	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6L_chr4_77708387_77824368	0/0	c0003	1668	1	1	0	0	0	0	copy fasta	CNOT6L	chr4	77708387	77824368
CNOT6_chr5_180489379_180583358	0/1	c0001	1674	294	57	63	126	12	35	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	1/0	c0002	1674	35	26	7	0	0	1	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	c0003	1674	2	2	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	c0004	1674	2	0	0	2	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT6_chr5_180489379_180583358	0/0	c0005	1674	1	1	0	0	0	0	copy fasta	CNOT6	chr5	180489379	180583358
CNOT7_chr8_17219966_17251857	1/1	c0001	858	406	91	60	193	16	44	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	c0002	858	1	0	0	1	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT7_chr8_17219966_17251857	0/0	c0003	858	1	1	0	0	0	0	copy fasta	CNOT7	chr8	17219966	17251857
CNOT8_chr5_154853627_154881792	1/1	c0001	879	337	89	64	140	14	28	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	c0002	879	1	0	1	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	c0003	879	1	0	0	1	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	c0004	879	1	1	0	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	c0005	879	1	0	0	1	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT8_chr5_154853627_154881792	0/0	c0006	879	1	0	1	0	0	0	copy fasta	CNOT8	chr5	154853627	154881792
CNOT9_chr2_218563839_218602080	1/1	c0001	900	322	88	42	136	12	42	copy fasta	CNOT9	chr2	218563839	218602080
CNPPD1_chr2_219166897_219181925	0/0	c0001	1233	209	62	38	85	4	20	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/1	c0002	1233	143	34	23	61	8	16	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0003	1233	56	0	6	41	4	5	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0004	1233	6	0	2	3	0	1	copy fasta	CNPPD1	chr2	219166897	219181925