JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNPPD1_chr2_219166897_219181925	0/0	c0005	1233	3	0	2	0	0	1	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0006	1233	3	0	0	3	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	1/0	c0007	1233	2	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0008	1233	1	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0009	1233	1	0	1	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0010	1233	1	0	0	0	0	1	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0012	1233	1	0	1	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0013	1233	1	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0014	1233	1	1	0	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0015	1233	1	0	0	1	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0016	1233	1	0	1	0	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPPD1_chr2_219166897_219181925	0/0	c0017	1260	1	0	0	1	0	0	copy fasta	CNPPD1	chr2	219166897	219181925
CNPY1_chr7_155496129_155551559	0/1	c0001	438	224	67	43	83	10	20	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	1/0	c0002	438	94	16	14	45	6	12	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	c0003	438	69	10	17	30	2	10	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	c0004	438	38	2	4	30	0	2	copy fasta	CNPY1	chr7	155496129	155551559
CNPY1_chr7_155496129_155551559	0/0	c0005	438	1	1	0	0	0	0	copy fasta	CNPY1	chr7	155496129	155551559
CNPY2_chr12_56304844_56320988	1/1	c0001	549	368	83	72	161	14	36	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	c0002	534	1	0	0	1	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	c0003	549	1	0	0	1	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	c0004	549	1	0	0	1	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY2_chr12_56304844_56320988	0/0	c0005	549	1	1	0	0	0	0	copy fasta	CNPY2	chr12	56304844	56320988
CNPY3_chr6_42924480_42944294	1/1	c0001	837	339	61	62	162	10	42	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	c0002	837	65	35	18	4	2	6	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	c0003	825	2	0	0	2	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	c0004	837	1	0	0	1	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY3_chr6_42924480_42944294	0/0	c0005	837	1	0	0	1	0	0	copy fasta	CNPY3	chr6	42924480	42944294
CNPY4_chr7_100114634_100130508	1/1	c0001	747	395	76	69	186	14	48	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	c0002	741	11	11	0	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	c0003	747	9	8	1	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNPY4_chr7_100114634_100130508	0/0	c0004	747	1	1	0	0	0	0	copy fasta	CNPY4	chr7	100114634	100130508
CNP_chr17_41961795_41982740	1/1	c0001	1266	294	78	64	110	12	28	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0002	1266	130	10	21	77	6	16	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0003	1266	3	3	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0004	1266	2	2	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0005	1266	2	0	0	2	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0006	1266	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0007	1266	1	0	1	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0008	1266	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0010	1266	1	1	0	0	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNP_chr17_41961795_41982740	0/0	c0012	1266	1	0	0	1	0	0	copy fasta	CNP	chr17	41961795	41982740
CNR1_chr6_88134864_88171347	1/1	c0001	1419	349	84	64	157	10	32	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	c0002	1419	40	2	9	14	5	10	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	c0003	1419	5	3	1	0	1	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	c0004	1419	2	0	0	2	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	c0005	1419	1	1	0	0	0	0	copy fasta	CNR1	chr6	88134864	88171347
CNR1_chr6_88134864_88171347	0/0	c0006	1419	1	0	0	1	0	0	copy fasta	CNR1	chr6	88134864	88171347