JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNR2_chr1_23865515_23918362	0/1	c0001	1083	172	65	34	45	5	22	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	1/0	c0002	1083	55	14	10	21	5	4	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	c0003	1083	33	0	6	18	2	7	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	c0004	1083	7	7	0	0	0	0	copy fasta	CNR2	chr1	23865515	23918362
CNR2_chr1_23865515_23918362	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	CNR2	chr1	23865515	23918362
CNRIP1_chr2_68288010_68324949	1/1	c0001	495	295	52	42	167	9	23	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	c0002	495	69	19	21	10	2	17	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	c0003	495	55	25	13	8	3	6	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	c0004	495	2	0	0	2	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	c0005	495	2	0	0	0	2	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNRIP1_chr2_68288010_68324949	0/0	c0006	495	1	0	0	1	0	0	copy fasta	CNRIP1	chr2	68288010	68324949
CNST_chr1_246561456_246673595	0/1	c0001	2178	250	58	64	83	13	31	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	1/0	c0002	2178	43	13	6	18	3	2	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0003	2178	12	10	2	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0004	2178	6	6	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0005	2178	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0006	2178	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0007	2178	1	0	0	0	0	1	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0008	2178	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0009	2178	1	0	0	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0010	2178	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0011	2178	1	1	0	0	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0012	2178	1	0	0	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNST_chr1_246561456_246673595	0/0	c0013	2178	1	0	0	1	0	0	copy fasta	CNST	chr1	246561456	246673595
CNTD1_chr17_42793861_42816587	1/1	c0001	993	257	46	45	123	12	29	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0002	993	32	21	1	6	0	4	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0003	993	5	5	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0004	993	5	5	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0005	993	3	0	1	2	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0006	993	1	0	0	0	0	1	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0007	993	1	1	0	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0008	993	1	0	0	1	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTD1_chr17_42793861_42816587	0/0	c0009	993	1	0	1	0	0	0	copy fasta	CNTD1	chr17	42793861	42816587
CNTFR_chr9_34546433_34594724	1/1	c0001	1208	377	93	79	149	14	40	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0002	1208	13	0	1	12	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0003	1208	2	1	1	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0004	1208	2	0	0	2	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0005	1208	2	0	0	0	0	2	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0006	1208	1	1	0	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0007	1208	1	0	0	0	0	1	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0008	1208	1	0	0	0	0	1	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0009	1208	1	0	1	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0010	1208	1	1	0	0	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTFR_chr9_34546433_34594724	0/0	c0011	1208	1	0	0	1	0	0	copy fasta	CNTFR	chr9	34546433	34594724
CNTF_chr11_58617665_58630733	1/1	c0001	603	389	77	72	183	10	45	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	c0002	603	11	11	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	c0003	603	5	0	0	5	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	c0004	603	2	0	0	0	2	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	c0005	603	1	1	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTF_chr11_58617665_58630733	0/0	c0006	603	1	0	0	0	0	1	copy fasta	CNTF	chr11	58617665	58630733