JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTF_chr11_58617665_58630733	0/0	c0007	603	1	1	0	0	0	0	copy fasta	CNTF	chr11	58617665	58630733
CNTLN_chr9_17130040_17508923	0/1	c0001	4221	41	8	12	17	0	3	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0002	4221	22	4	0	16	0	2	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0003	4221	20	5	7	7	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0004	4221	16	3	2	10	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0005	4221	14	0	2	10	0	2	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0006	4221	11	2	4	5	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0007	4221	9	9	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0008	4221	7	1	3	0	0	3	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0009	4221	6	6	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0010	4221	5	5	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0011	4221	5	5	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0012	4221	4	2	2	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0013	4221	3	2	1	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0014	4221	3	2	0	0	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0015	4221	3	3	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0016	4221	3	0	0	3	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	1/0	c0017	4221	2	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0018	4221	2	0	2	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0019	4221	2	1	1	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0020	4221	2	2	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0021	4221	2	2	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0022	4221	2	2	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0023	4221	2	0	0	2	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0024	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0025	4221	1	0	0	0	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0026	4221	1	0	1	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0027	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0028	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0029	4221	1	0	0	0	1	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0030	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0031	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0032	4221	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0033	4221	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0034	4221	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0035	4221	1	0	0	0	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0036	4221	1	0	0	0	1	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0037	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0038	4221	1	0	0	0	0	1	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0039	4221	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0040	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0041	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0042	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0043	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0044	4221	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0045	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0046	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0047	4221	1	0	1	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0048	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0049	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923