JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTLN_chr9_17130040_17508923	0/0	c0050	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0051	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0052	4221	1	0	0	1	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0053	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0054	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTLN_chr9_17130040_17508923	0/0	c0055	4221	1	1	0	0	0	0	copy fasta	CNTLN	chr9	17130040	17508923
CNTN1_chr12_40687439_41077415	0/0	c0001	3057	109	29	26	42	5	7	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0002	3057	67	14	14	33	4	2	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0003	3057	20	8	6	3	2	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0004	3057	9	9	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0005	3057	8	6	2	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0006	3057	6	1	3	0	1	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0007	3057	5	3	2	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0008	3057	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0009	3057	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0010	3057	1	0	0	1	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0011	3057	1	0	0	0	0	1	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0012	3057	1	1	0	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN1_chr12_40687439_41077415	0/0	c0013	3057	1	0	1	0	0	0	copy fasta	CNTN1	chr12	40687439	41077415
CNTN2_chr1_205038212_205083289	1/1	c0001	3123	119	56	28	16	6	11	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0002	3123	93	6	17	58	4	8	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0003	3123	68	0	11	51	0	6	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0004	3123	24	2	6	10	2	4	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0005	3123	17	5	2	3	2	5	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0006	3123	11	0	2	9	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0007	3123	10	9	0	0	1	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0008	3123	7	7	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0009	3123	4	0	0	4	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0010	3123	3	0	3	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0011	3123	3	0	3	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0012	3123	3	3	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0013	3123	3	2	1	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0014	3123	2	1	0	0	1	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0015	3123	2	0	0	0	0	2	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0016	3123	2	1	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0017	3123	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0018	3123	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0019	3123	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0020	3123	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0021	3123	1	0	1	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0022	3123	1	0	0	1	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0023	3123	1	1	0	0	0	0	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0024	3123	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN2_chr1_205038212_205083289	0/0	c0025	3123	1	0	0	0	0	1	copy fasta	CNTN2	chr1	205038212	205083289
CNTN3_chr3_74257568_74619659	1/0	c0001	3087	57	17	15	20	2	2	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/1	c0002	3087	50	13	10	19	0	7	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0003	3087	14	14	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0004	3087	12	2	0	9	1	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0005	3087	11	3	2	3	0	3	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0006	3087	4	0	0	2	0	2	copy fasta	CNTN3	chr3	74257568	74619659