JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTN3_chr3_74257568_74619659	0/0	c0007	3087	3	3	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0008	3087	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0009	3087	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0010	3087	2	0	2	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0011	3087	2	2	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0012	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0013	3087	1	0	1	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0014	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0015	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0016	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0017	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0018	3087	1	0	0	1	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0019	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0020	3087	1	0	0	0	1	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0021	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0022	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0023	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0024	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0025	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN3_chr3_74257568_74619659	0/0	c0026	3087	1	1	0	0	0	0	copy fasta	CNTN3	chr3	74257568	74619659
CNTN4_chr3_2093866_3062959	0/0	c0001	3081	27	14	7	2	2	2	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0002	3081	22	15	3	0	0	4	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0003	3081	15	0	6	4	0	5	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0004	3081	10	1	4	2	0	3	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0005	3081	9	7	2	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0006	3081	5	5	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0007	3081	3	1	0	1	0	1	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0008	3081	2	2	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0009	3081	2	0	1	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0010	3081	2	1	1	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0011	3081	2	0	2	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0012	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0013	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0014	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0015	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0016	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0017	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0018	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0019	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0020	3081	1	0	0	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0021	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0022	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0023	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0024	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0025	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0026	3081	1	0	0	1	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0027	3081	1	1	0	0	0	0	copy fasta	CNTN4	chr3	2093866	3062959
CNTN4_chr3_2093866_3062959	0/0	c0028	3081	1	0	0	0	0	1	copy fasta	CNTN4	chr3	2093866	3062959
CNTN5_chr11_99015949_100363885	0/0	c0001	3303	27	10	11	3	0	3	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0002	3303	9	3	5	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885