JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTN5_chr11_99015949_100363885	0/0	c0003	3303	8	3	2	2	0	1	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0004	3303	5	2	1	2	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0005	3303	5	4	1	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0006	3303	5	2	2	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0007	3303	1	0	0	1	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0008	3303	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0009	3303	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0010	3303	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0011	3303	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0012	3303	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN5_chr11_99015949_100363885	0/0	c0013	3303	1	1	0	0	0	0	copy fasta	CNTN5	chr11	99015949	100363885
CNTN6_chr3_1088024_1409217	0/0	c0001	3087	37	5	9	13	2	8	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/1	c0002	3087	36	6	10	12	1	6	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0003	3087	31	4	5	20	1	1	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0004	3087	25	0	9	13	0	3	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	1/0	c0005	3087	25	17	5	0	1	1	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0006	3087	19	15	4	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0007	3087	17	5	5	1	2	4	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0008	3087	13	7	4	2	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0009	3087	3	1	0	0	0	2	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0010	3087	3	2	0	0	0	1	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0011	3087	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0012	3087	2	0	1	0	1	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0013	3087	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0014	3087	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0015	3087	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0016	3087	2	2	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0017	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0018	3087	1	0	0	1	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0019	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0020	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0021	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0022	3087	1	0	1	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0023	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0024	3087	1	0	1	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0025	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0026	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTN6_chr3_1088024_1409217	0/0	c0027	3087	1	1	0	0	0	0	copy fasta	CNTN6	chr3	1088024	1409217
CNTNAP1_chr17_42677531_42704993	0/0	c0001	4155	165	50	25	61	5	24	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	1/1	c0002	4155	146	21	31	75	4	13	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0003	4155	17	13	4	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0004	4155	8	0	7	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0005	4155	7	0	0	5	0	2	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0006	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0007	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0008	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0009	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0010	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0011	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0012	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993