JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTNAP1_chr17_42677531_42704993	0/0	c0013	4155	1	0	0	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0014	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0015	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0016	4155	1	0	0	0	1	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0017	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0018	4155	1	0	0	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0019	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0020	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0021	4155	1	1	0	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0022	4155	1	0	0	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0023	4155	1	0	0	0	0	1	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0024	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0025	4155	1	0	0	1	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP1_chr17_42677531_42704993	0/0	c0026	4155	1	0	1	0	0	0	copy fasta	CNTNAP1	chr17	42677531	42704993
CNTNAP2_chr7_146111801_148425998	0/0	c0001	3996	8	8	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0002	3996	6	5	0	0	0	1	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0003	3996	5	5	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0004	3996	3	3	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0005	3996	2	2	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0006	3996	2	1	1	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0007	3996	1	0	0	0	0	1	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0008	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0009	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0010	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0011	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0012	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0013	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0014	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0015	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0016	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0017	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0018	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0019	3996	1	0	1	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP2_chr7_146111801_148425998	0/0	c0020	3996	1	1	0	0	0	0	copy fasta	CNTNAP2	chr7	146111801	148425998
CNTNAP3B_chr9_41885536_42134426	0/0	c0001	3867	20	0	8	6	2	4	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/1	c0002	3867	19	1	7	4	0	6	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0003	3867	8	2	1	2	1	2	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0004	3867	5	0	1	1	1	2	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0005	3867	4	2	0	0	1	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0006	3867	3	3	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0007	3867	3	1	0	1	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0008	3867	3	0	2	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0009	3867	2	2	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0010	3867	2	0	1	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0011	3867	2	1	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0012	3867	2	0	1	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0013	3867	2	0	0	0	1	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0014	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0015	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0016	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426