Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM8_chr10_133257423_133281868	0/0	c0028	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0029	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0030	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0031	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0032	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0033	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0034	2475	1	1	0	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0035	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0036	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0037	2475	1	0	1	0	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0038	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0039	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0040	2475	1	0	0	1	0	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM8_chr10_133257423_133281868	0/0	c0041	2475	1	0	0	0	1	0	copy fasta	ADAM8	chr10	133257423	133281868
ADAM9_chr8_38991973_39110261	1/1	c0001	2460	304	70	54	127	9	42	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0002	2460	13	13	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0003	2460	7	1	5	0	1	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0004	2460	2	0	0	2	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0005	2460	1	0	1	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0006	2460	1	0	0	1	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0007	2460	1	0	0	1	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0008	2460	1	1	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0009	2460	1	0	0	1	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAM9_chr8_38991973_39110261	0/0	c0010	2460	1	1	0	0	0	0	copy fasta	ADAM9	chr8	38991973	39110261
ADAMDEC1_chr8_24379285_24411013	1/0	c0001	1413	280	68	41	139	8	23	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/1	c0002	1413	79	8	21	32	7	10	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0003	1413	28	0	6	19	1	2	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0004	1413	6	6	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0005	1413	2	0	2	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0006	1413	2	2	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0007	1413	1	1	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0008	1413	1	1	0	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0009	1413	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0010	1413	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0011	1413	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0012	1413	1	0	1	0	0	0	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMDEC1_chr8_24379285_24411013	0/0	c0013	1413	1	0	0	0	0	1	copy fasta	ADAMDEC1	chr8	24379285	24411013
ADAMTS10_chr19_8575240_8615715	0/1	c0001	3312	260	51	41	116	7	44	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0002	3312	49	13	9	24	0	3	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0003	3312	15	0	8	2	4	1	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0004	3312	10	0	7	3	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0005	3312	10	1	7	0	1	1	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0006	3312	7	7	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0007	3312	5	0	3	0	2	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0008	3312	5	2	0	3	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0009	3312	3	3	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0010	3312	3	3	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0011	3312	2	2	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0012	3312	2	2	0	0	0	0	copy fasta	ADAMTS10	chr19	8575240	8615715
ADAMTS10_chr19_8575240_8615715	0/0	c0013	3312	2	0	0	0	2	0	copy fasta	ADAMTS10	chr19	8575240	8615715