JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTNAP3B_chr9_41885536_42134426	0/0	c0017	3867	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0018	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0019	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0020	3867	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0021	3867	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0022	3867	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0023	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0024	3867	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0025	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0026	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0027	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0028	3867	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0029	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0030	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0031	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0032	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	1/0	c0033	3867	1	0	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0034	3867	1	0	0	0	1	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0035	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0036	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0037	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0038	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0039	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0040	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0041	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0042	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0043	3867	1	0	0	1	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0044	3867	1	0	0	0	0	1	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0045	3867	1	0	1	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3B_chr9_41885536_42134426	0/0	c0046	3867	1	1	0	0	0	0	copy fasta	CNTNAP3B	chr9	41885536	42134426
CNTNAP3_chr9_39059710_39293167	0/0	c0001	3867	1	1	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	0/1	c0002	3867	1	0	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	0/0	c0003	3867	1	1	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP3_chr9_39059710_39293167	1/0	c0004	3867	1	0	0	0	0	0	copy fasta	CNTNAP3	chr9	39059710	39293167
CNTNAP4_chr16_76272401_76565757	0/0	c0001	3927	96	17	23	41	4	11	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0002	3927	41	12	8	17	0	4	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	1/1	c0003	3927	19	17	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0004	3927	19	0	2	13	0	4	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0005	3927	14	0	3	6	0	5	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0006	3927	12	5	5	2	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0007	3927	8	6	2	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0008	3927	7	0	0	6	1	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0009	3927	5	3	0	2	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0010	3927	5	1	0	2	1	1	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0011	3927	4	0	0	4	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0012	3927	3	3	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0013	3927	3	2	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0014	3927	3	3	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0015	3927	2	2	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0016	3927	2	0	0	0	0	2	copy fasta	CNTNAP4	chr16	76272401	76565757