JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTNAP4_chr16_76272401_76565757	0/0	c0017	3927	2	0	0	1	0	1	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0018	3927	2	0	0	2	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0019	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0020	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0021	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0022	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0023	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0024	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0025	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0026	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0027	3927	1	0	0	0	0	1	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0028	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0029	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0030	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0031	3927	1	0	0	0	0	1	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0032	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0033	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0034	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0035	3927	1	0	0	1	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0036	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0037	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0038	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0039	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0040	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0041	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0042	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0043	3927	1	0	1	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0044	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP4_chr16_76272401_76565757	0/0	c0045	3927	1	1	0	0	0	0	copy fasta	CNTNAP4	chr16	76272401	76565757
CNTNAP5_chr2_124020287_124926219	0/1	c0001	3924	30	17	6	2	0	4	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	1/0	c0002	3924	28	25	1	1	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	c0003	3924	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	c0004	3924	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	c0005	3924	1	0	1	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	c0006	3924	1	0	0	1	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	c0007	3924	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTNAP5_chr2_124020287_124926219	0/0	c0008	3924	1	1	0	0	0	0	copy fasta	CNTNAP5	chr2	124020287	124926219
CNTRL_chr9_121069955_121182610	1/1	c0001	6978	90	42	10	35	1	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0002	6978	85	2	18	49	5	11	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0003	6978	68	3	14	40	2	9	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0004	6978	16	6	4	3	1	2	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0005	6978	12	4	4	2	2	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0006	6978	10	9	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0007	6978	6	6	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0008	6978	5	0	0	5	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0009	6978	4	0	4	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0010	6978	3	0	1	0	0	2	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0011	6978	3	0	3	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0012	6978	3	3	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0013	6978	2	0	2	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610