JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CNTRL_chr9_121069955_121182610	0/0	c0014	6978	2	2	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0015	6978	2	0	0	0	2	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0016	6978	1	0	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0017	6978	1	0	0	0	1	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0018	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0019	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0020	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0021	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0022	6978	1	0	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0023	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0024	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0025	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0026	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0027	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0028	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0029	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0030	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0031	6978	1	0	1	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0032	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0033	6978	1	0	0	1	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTRL_chr9_121069955_121182610	0/0	c0034	6978	1	1	0	0	0	0	copy fasta	CNTRL	chr9	121069955	121182610
CNTROB_chr17_7927206_7954920	0/1	c0001	2712	244	46	40	118	11	28	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	1/0	c0002	2712	116	25	24	52	6	8	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0003	2712	12	12	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0004	2712	8	6	2	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0005	2712	4	0	0	3	0	1	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0006	2712	3	3	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0007	2712	2	0	2	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0008	2712	2	0	1	0	1	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0009	2712	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0010	2712	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0011	2712	1	0	0	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0012	2712	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0013	2712	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0014	2712	1	0	0	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0015	2712	1	0	0	1	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0016	2712	1	0	0	0	0	1	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0017	2712	1	0	1	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0018	2712	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
CNTROB_chr17_7927206_7954920	0/0	c0019	2712	1	1	0	0	0	0	copy fasta	CNTROB	chr17	7927206	7954920
COA1_chr7_43634257_43734523	1/1	c0001	441	381	84	78	167	18	32	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	c0002	441	2	0	2	0	0	0	copy fasta	COA1	chr7	43634257	43734523
COA1_chr7_43634257_43734523	0/0	c0003	441	1	0	0	1	0	0	copy fasta	COA1	chr7	43634257	43734523
COA3_chr17_42792625_42803704	1/1	c0001	321	308	81	51	132	8	34	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	c0002	321	1	0	1	0	0	0	copy fasta	COA3	chr17	42792625	42803704
COA3_chr17_42792625_42803704	0/0	c0003	321	1	1	0	0	0	0	copy fasta	COA3	chr17	42792625	42803704
COA4_chr11_73867667_73881846	1/1	c0001	264	390	91	75	166	12	44	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	c0002	264	2	2	0	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	c0003	264	1	0	1	0	0	0	copy fasta	COA4	chr11	73867667	73881846
COA4_chr11_73867667_73881846	0/0	c0004	264	1	1	0	0	0	0	copy fasta	COA4	chr11	73867667	73881846