JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COA5_chr2_98594314_98613512	1/1	c0001	225	418	86	79	193	16	42	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	c0002	225	1	0	1	0	0	0	copy fasta	COA5	chr2	98594314	98613512
COA5_chr2_98594314_98613512	0/0	c0003	225	1	0	0	1	0	0	copy fasta	COA5	chr2	98594314	98613512
COA6_chr1_234368456_234390080	0/0	c0001	468	236	85	47	80	7	17	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	1/1	c0002	468	159	9	26	92	7	23	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	c0003	468	7	0	1	6	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	c0004	468	3	0	0	3	0	0	copy fasta	COA6	chr1	234368456	234390080
COA6_chr1_234368456_234390080	0/0	c0005	468	1	0	0	1	0	0	copy fasta	COA6	chr1	234368456	234390080
COA7_chr1_52679449_52703347	0/0	c0001	696	353	82	47	184	11	29	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	c0002	696	60	15	17	2	7	19	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	c0003	696	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	c0004	696	1	1	0	0	0	0	copy fasta	COA7	chr1	52679449	52703347
COA7_chr1_52679449_52703347	0/0	c0005	696	1	0	0	1	0	0	copy fasta	COA7	chr1	52679449	52703347
COA8_chr14_103557960_103595896	1/1	c0001	582	169	34	28	83	5	17	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0002	582	93	23	20	30	8	12	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0003	582	88	7	16	48	5	12	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0004	582	12	12	0	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0005	582	11	10	1	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0006	582	3	0	3	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0007	582	3	1	2	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0008	582	1	0	0	1	0	0	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0009	582	1	0	0	0	0	1	copy fasta	COA8	chr14	103557960	103595896
COA8_chr14_103557960_103595896	0/0	c0010	582	1	1	0	0	0	0	copy fasta	COA8	chr14	103557960	103595896
COASY_chr17_42557148_42571277	0/0	c0001	1695	203	35	37	95	7	29	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	1/1	c0002	1695	178	53	33	65	9	16	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0003	1695	4	0	0	4	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0004	1695	2	0	0	0	0	2	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0005	1695	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0006	1695	1	0	0	0	0	1	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0007	1695	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0008	1695	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0009	1695	1	1	0	0	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0010	1695	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COASY_chr17_42557148_42571277	0/0	c0011	1695	1	0	0	1	0	0	copy fasta	COASY	chr17	42557148	42571277
COBLL1_chr2_164675188_164846823	1/0	c0001	3387	101	32	25	23	7	13	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0002	3387	42	29	6	6	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/1	c0003	3387	19	8	6	0	2	2	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0004	3387	6	1	3	0	1	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0005	3387	6	6	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0006	3387	3	0	0	3	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0007	3387	3	0	1	1	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0008	3387	2	0	0	2	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0009	3387	2	1	0	0	1	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0010	3387	2	1	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0011	3387	2	2	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0012	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0013	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0014	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0015	3387	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0016	3387	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823