JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COBLL1_chr2_164675188_164846823	0/0	c0017	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0018	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0019	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0020	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0021	3387	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0022	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0023	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0024	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0025	3387	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0026	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0027	3387	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0028	3387	1	0	0	0	0	1	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0029	3387	1	0	0	1	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0030	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0031	3387	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0032	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0033	3387	1	0	1	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0034	3387	1	1	0	0	0	0	copy fasta	COBLL1	chr2	164675188	164846823
COBLL1_chr2_164675188_164846823	0/0	c0035	3387	1	0	0	0	1	0	copy fasta	COBLL1	chr2	164675188	164846823
COBL_chr7_51011212_51321809	0/1	c0001	3786	25	5	5	6	3	5	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0002	3786	24	0	2	19	0	3	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0003	3783	23	5	6	11	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0004	3786	17	9	2	5	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0005	3783	10	1	1	8	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0006	3783	8	0	0	7	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0007	3783	7	1	3	3	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0008	3783	7	7	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0009	3783	7	1	1	1	2	2	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0010	3783	6	3	2	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0011	3786	6	0	2	2	0	2	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0012	3786	5	0	0	5	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0013	3786	5	2	0	3	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0014	3786	4	0	0	3	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0015	3786	4	4	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0016	3786	4	4	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0017	3786	3	0	3	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0018	3783	3	0	0	2	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0019	3783	3	0	1	2	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0020	3783	3	1	0	0	0	2	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0021	3786	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0022	3786	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0023	3786	2	0	2	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0024	3786	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0025	3783	2	1	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0026	3783	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0027	3783	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0028	3783	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0029	3783	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0030	3783	2	2	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0031	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809