JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COBL_chr7_51011212_51321809	0/0	c0032	3783	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0033	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0034	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0035	3786	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0036	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0037	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0038	3786	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0039	3786	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0040	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0041	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0042	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0043	3786	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0044	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0045	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0046	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0047	3783	1	0	0	0	0	1	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0048	3783	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0049	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0050	3783	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0051	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0052	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0053	3786	1	0	0	1	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0054	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	1/0	c0055	3786	1	0	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0056	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0057	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0058	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0059	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0060	3786	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0061	3786	1	0	1	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0062	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0063	3783	1	0	0	0	1	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0064	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0065	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COBL_chr7_51011212_51321809	0/0	c0066	3783	1	1	0	0	0	0	copy fasta	COBL	chr7	51011212	51321809
COCH_chr14_30869559_30895618	1/0	c0001	1653	285	64	30	158	6	26	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/1	c0002	1653	174	20	50	77	10	16	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0003	1653	2	2	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0004	1653	2	0	2	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0005	1653	2	2	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0006	1653	2	2	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0007	1653	2	2	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0008	1653	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0009	1653	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0010	1653	1	0	0	0	0	1	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0011	1653	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0012	1653	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0013	1653	1	1	0	0	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0014	1653	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COCH_chr14_30869559_30895618	0/0	c0015	1653	1	0	0	0	0	1	copy fasta	COCH	chr14	30869559	30895618