JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COCH_chr14_30869559_30895618	0/0	c0016	1653	1	0	0	1	0	0	copy fasta	COCH	chr14	30869559	30895618
COG1_chr17_73188055_73213507	1/1	c0001	2943	172	44	30	73	2	21	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0002	2943	152	27	29	79	3	14	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0003	2943	52	2	8	29	3	10	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0004	2943	23	22	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0005	2943	11	3	5	0	1	2	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0006	2943	7	0	0	6	0	1	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0007	2943	3	0	3	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0008	2943	2	0	1	0	1	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0009	2943	1	0	0	1	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0010	2943	1	1	0	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0011	2943	1	1	0	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0012	2943	1	0	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0013	2943	1	0	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG1_chr17_73188055_73213507	0/0	c0014	2943	1	0	1	0	0	0	copy fasta	COG1	chr17	73188055	73213507
COG2_chr1_230637481_230698982	1/0	c0001	2217	156	44	27	53	12	19	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0002	2217	147	15	27	93	1	11	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0003	2217	33	3	9	11	4	6	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0004	2217	26	10	1	14	0	1	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0005	2217	9	0	0	9	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0006	2217	6	5	1	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0007	2217	5	4	1	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/1	c0008	2217	3	1	1	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0009	2217	2	0	0	2	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0010	2217	2	2	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0011	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0012	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0013	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0014	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0015	2217	1	0	0	0	0	1	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0016	2217	1	0	0	1	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0017	2217	1	0	0	1	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0018	2217	1	0	0	0	1	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0019	2217	1	0	0	1	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0020	2217	1	0	0	0	0	1	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0021	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0022	2217	1	0	1	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0023	2217	1	0	0	1	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0024	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0025	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0026	2217	1	0	0	0	0	1	copy fasta	COG2	chr1	230637481	230698982
COG2_chr1_230637481_230698982	0/0	c0027	2217	1	1	0	0	0	0	copy fasta	COG2	chr1	230637481	230698982
COG3_chr13_45459939_45541701	0/0	c0001	2487	104	9	20	59	2	14	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/1	c0002	2487	100	27	26	40	2	4	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0003	2487	64	21	10	24	2	7	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0004	2487	29	2	5	16	2	4	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0005	2487	16	10	3	2	0	1	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0006	2487	8	8	0	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0007	2487	7	6	1	0	0	0	copy fasta	COG3	chr13	45459939	45541701
COG3_chr13_45459939_45541701	0/0	c0008	2487	2	0	1	0	0	1	copy fasta	COG3	chr13	45459939	45541701